Gene detail

Gene detail information of Glyur000103s00007446

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23420.1	4.00E-33	high-mobility group box 6
NR	XP_004497256.1	4.30E-112	PREDICTED: high mobility group B protein 7-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8LDF9\|HMGB7_ARATH	6.00E-48	High mobility group B protein 7
trEMBL	tr\|A0A072VSQ8\|A0A072VSQ8_MEDTR	9.00E-107	High mobility group (HMG)-box protein {ECO:0000313\|EMBL:KEH44448.1}

Sequence

Transcript Sequence

>Glyur000103s00007446.1
CCGCGGATCCATCCGCGTGAGCGCGAATGCAAAAATGGAAATGGAAAGGCGCTGTTGTCATTGGCGCTAAAACGAAAATGCCAATTCGGTTTTCCCTCCTTTGCTTTTCGTTTCATATATATACACACACACTCGAAGAATACTTTGGCATTGTCAATTTGAAGAAGGAGTGAAAGCACTAACCATTAACTAAGCAGCAGCGAGTGAGGCAGAGACAAATTAGGTTAAGGCACAGAGAAGAAAAGGAGCAAATGGCGTCGCAGGGAAGGAAGAGAGTTGATGCGGTCGATTCTCGTTCTTCTTCCGTTCTCGTTCGCGCCAAAGATGGCAGTGCTTTTGCTCGATGCGAAGAGTGCAAGAAGGATGTGCCGGTTGCACTCATTAGCATGCACAGTTGCAGCCTCGAAGCTAAAATCAAAATGAACCTGGATGCTCAGGTTGTTGAGCAGACTACTGAAGTCAAGAAGCCCGAGAGGAAGAAACCTAAATCCAAAGAACCAAATGCTAAAAGGGCTAAAGTCGAGAAAGGGAAAAAGGCCAAGGATCCTAACATGCCCAAGCGTCCTCCCACGGCTTTCTTTGTCTTCTTGGATGACTTTAGAAAGGAATTCAAGGAAGCAAATCCTAATTCAAAGGACGTTAAAAGGGTTGGCAAAGAGGCCGGTGAGAAGTGGAAGTCTATGACTGATGAAGAGAAGAAGCCTTATTTGGATAAGGCCGTTGAACTCAAGGCAGAATATGAGAAGGCCATGGCAAGTTATAATGCTGCTGATGCTGAAGATGAAGATCGAGAGGGGTCTGACAAGTCTGATAAGGAAGCGGAAGCCCCTCAAGCAGAAGTGGAAGAGTTAACCGATGAGGAGTAAGAGTGGCATGTCGGTGCTCCTTAAACCTGATTACTATGTGGAAATGGCAATTAAACTTAGTCTAGGGCTGTAAATTTTGGACCATGTCGTATTTTTATATTTAGGCGTCACTACTTTGGTAGCTTTGAAATCCCCGTGCAACATCTTATTGTACTGTCCTCTTGAAATGTCCCCAATGCTAGTTACATTATTTTCTCCAAGAGGTGTTGCTGTGTTGCCTTTTTATTTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	195423	197240	-

Gene family

Gene family	subfamily
Transcription Factors Family	HMG

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007446.1	PF00505.14	HMG_box	102	171	2.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.544
SRR1783600	control	16.405
SRR1783602	moderate drought stress	10.363
SRR1811619	moderate drought stress	10.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.968
DRR006520	Root Summer glycyrrhizin high producing strain	22.446
DRR006521	Root Winter glycyrrhizin high producing strain	15.509
DRR006522	Root Winter glycyrrhizin high producing strain	15.138
DRR006523	Root Summer glycyrrhizin low producing strain	12.331
DRR006524	Root Summer glycyrrhizin low producing strain	11.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.355

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	75.555
SRR2868004	Drought Stress (root)	39.251
SRR2967015	Control (root)	39.289

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.702
SRR9715740	Leaf	4.101
SRR9715741	Leaf	6.978
SRR9715739	Root	8.109
SRR9715742	Root	8.639
SRR9715743	Root	8.129

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	149.489
SRR8749028	MeJA induced 9h	47.720
SRR8749029	MeJA induced 9h	78.094
SRR8749030	Uninduced	5.580
SRR8749031	Uninduced	4.342
SRR8749032	Uninduced	14.601

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.274
SRR8400027	Control - Root	44.071