Gene detail

Gene detail information of Glyur000103s00007445

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23400.1	2.00E-172	Leucine-rich repeat (LRR) family protein
NR	XP_004497258.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	5.00E-41	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	2.00E-64	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|A0A072VR32\|A0A072VR32_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH44449.1}

Sequence

Transcript Sequence

>Glyur000103s00007445.1
ATGCAATTTTTCANATGGGTGTTCAACCTTGTTCTGATATTTTCATTCCTCAGTCAGTTCTCAGAGAGTTCGTCACAGACATCTTCAGCACCAGAGGCTCCAATCTGTTCTGAAGAAGACAGAGCTGCACTTCTCAGCTTCAAAGCAGGCATTTTGAANGACACAACCGATACGCTGTCGACGTGGACAGGAAGAGACTGCTGCGATGGCGGCTGGGAAGGAGTTCAGTGTAACCCTTCCACAGGGAGAGTTAATGTGTTGCAGATACAAAGGCCTGATGGTTATATGCAGGGCATTCTTTCTCCCTCACTGGGCAATTTGCATTTCTTGGAGGTATTGGCAATAGGTGGGATGCAGCACATTACAGGAACAATTCCTGCTAGCTTCTCAAATTTAACCCACCTCACCCAGCTAGTTCTGGAAGACAATTCCCTTGGAGGGTGCATTCCTCCAGGTTTAGGTCGTTTGTCCTTGCTACAGACCCTTTCATTGGGTGGGAACCATCTGAAAGGGCAGATCCCTCCAACAATAGGGAGTCTGAAGAACCTTGTNCAGGTTAATTTAGCAAGAAATTTTCTGACAGGTCCTATCCCCCTCAGTTTTAAAACCTTTCGAAATTTGCAATACCTTGACCTTAGTTACAATTTATTATCAGGGCCTATCCCGGATTTTGTTGGGGAGTTCCAAAATTTGACTTATGTAGACCTATCCTACAACCTACTAACAGGGAAAATTCCAATTTCCTTGTGTAACCTTGTCAATCTTTTAGACTTGACCTTGAGCCATAACAAGCTCACAGGGAACATCCCAGATCAGATTGGGAGTCTGAAATCCCTAACAAGTCTAAAACTTAGTGGCAATCAGCTCACAGGGCATGTTCCACTGTCCATATCAAAATTGCAGAAACTTTGGTACCTTAATGTATCGAGAAATGGGCTCTCAGGCCCCTTACCAGCCATTCCTAGCAAGGGCATCCCTGCCCTTTTGTCCATAGACCTGTCNTATAATAATCTCAGCCTGGGAAGTGTTCCTGATTGGATCAGAAGCAAGCCACTTAGAGATGTCCATCTAGCCGGGTGTAAATTGAAGGGGGATCTTCCACGCTTCATCAGACCCGACTCTCTGAGCTCCATAGACCTATCAGATAACTACCTGGTTGATGGTATTTCAAATTTCTTCACAAACATGTCCAGTTTGCAAAAGCTNAAGCTCTCAAACAACCAGTTGAGGTTTGACATTTCCAGAATAAAATTGCCACCCGAGTTGTCTTCCATAGATTTGCATGCAAATCTACTCGGGGGTTCACTGTCAACAATCATAAACAATGGGACAAGCAGCTCTTTGGAGGTCATAGATGTATCAAACAATNTCATTTCAGGTCACATTCCAGAATTTGTGGAAGGCTCAAGCTTGAAGGTGCTAAACTTGGGGAGCAACAATATATCAGGTTCAATCCCAGTTTCTATTTCAAACTTGGTGGAACTTGAGAGATTGGACATTTCAAGAAATCACATATTGGGAGACATCCCTTCAAGCCTAGGTCAGTTACTGAATCTGCAATGGCTTGATGTATCCATAAACGGACTCACAGGACAAATTCCAGGTAGCTTATCACAGATCAGCAATCTAAAGCATGCAAGCTTCAGGGCAAACAGGCTATGCGGAGCAATACCACAAACTAGACCATTCAACATCTTTCCAGCAGTTGCTTATGCCCACAACTTGTGCTTATGTGGCAAACCTTTGCAGCCATGCAAGGGAAAGAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	193118	194887	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007445.1	PF08263.7	LRRNT_2	38	78	2.10E-09
Glyur000103s00007445.1	PF12799.2	LRR_4	159	195	8.90E-08
Glyur000103s00007445.1	PF00560.28	LRR_1	206	224	0.058
Glyur000103s00007445.1	PF00560.28	LRR_1	230	252	0.096
Glyur000103s00007445.1	PF13855.1	LRR_8	258	313	3.60E-07
Glyur000103s00007445.1	PF00560.28	LRR_1	398	421	0.93
Glyur000103s00007445.1	PF13855.1	LRR_8	446	505	9.50E-08
Glyur000103s00007445.1	PF13516.1	LRR_6	518	539	1.5

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.038
SRR1783600	control	15.094
SRR1783602	moderate drought stress	6.331
SRR1811619	moderate drought stress	6.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.469
DRR006520	Root Summer glycyrrhizin high producing strain	16.525
DRR006521	Root Winter glycyrrhizin high producing strain	1.542
DRR006522	Root Winter glycyrrhizin high producing strain	1.408
DRR006523	Root Summer glycyrrhizin low producing strain	7.321
DRR006524	Root Summer glycyrrhizin low producing strain	7.162
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.569
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.403

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.707
SRR2868004	Drought Stress (root)	11.872
SRR2967015	Control (root)	12.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.493
SRR9715740	Leaf	0.898
SRR9715741	Leaf	1.668
SRR9715739	Root	10.468
SRR9715742	Root	11.420
SRR9715743	Root	9.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.080
SRR8749028	MeJA induced 9h	31.001
SRR8749029	MeJA induced 9h	12.147
SRR8749030	Uninduced	1.086
SRR8749031	Uninduced	0.087
SRR8749032	Uninduced	0.431

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.134
SRR8400027	Control - Root	17.797