Gene detail

Gene detail information of Glyur000103s00007436

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55390.1	2.00E-58	Uncharacterised protein family (UPF0497)
NR	XP_004497293.1	2.50E-119	PREDICTED: CASP-like protein RCOM_0464280-like [Cicer arietinum]
Swissprot	tr\|B9HTK2\|CSPLI_POPTR	1.00E-92	CASP-like protein 4C2
trEMBL	tr\|I1NF20\|I1NF20_SOYBN	7.00E-115	CASP-like protein {ECO:0000256\|RuleBase:RU361233}

Sequence

Transcript Sequence

>Glyur000103s00007436.1
CCTTCTCTCTCTCTCTCTCTCTCTCTGGAGACTGACTAACTCATGGAACTCTTGCTGCTTTTCTATCCCGTGACTTGACTCCCCCACTCCCCTCGCCATCAAATAAACAAAACAAAAAATCAAAAATTAAAACTGCCACTGTTATTGTTATTCTATTCTACTTCCACATGACATGATTTCTTCTCATATCGGAGGAAGAGGAGGAGTTTATAATTACCAATANTAATAGCATGCGATCCCCTCAGGCGCAGGCCCTTCGCAACGGAGGCGATAACCGTTCACCGTCGGCGCCTCGTTTCCACTCCACGGTGGCCGAACACAAACTGCGTCGTTTCAACTCCCTCATNCTCGTCTTCCGCCTCACCTCCTTCTCCTTCTCCCTCGCCTCCTCCGTCTTCATGCTCACCAACTCTCGCGGCTCCGATTCCCCACACTGGCACCACTACGACACCTTCAGATTCGTTGTGGCTGCGAATGCGATTGTGGCGGTGTACTCTGTGTTCGAAATGGGAGCGTCCGTTTGGGAAATTTCAAGAGGCGCTACACTGTTCCCCGAAGTGCTGCAAGTCTGGTTCGATTTCGGCCACGACCAGGTATTCGCGTACCTGCTGTTGTCGGCGAGCGCGGCGGGGACGTCGATGGCGAGGACGCTGAGGGATGACATGGACACGTGTACGGCGAGCAGTGCGTTCTGCGTGCAAGCGGACATAGCCATAGCGTTNGGGTACGCAGCGTTTCTGTTCCTAGGGTTCACATCGCTGCTATCGGGCTTCCGCCTCGTCTGTTTCATGATCAACGGTTCACGTTTTCATCTCTGATGGTCNGAGAGACTCTTTTTCTTCTGCGTGGGGAACCACGTCGTTCGTCGCCGAACTTGCCGGGAGGGGGAGGCAGGGGAAGAGGAATATTTTGGGTGGGGACGGGGGGGCCTTCTTTTTTCACTGTACTCCGAATACGCTGTGGATTTGGACCGACATGGTTGGCAGAGGGACTCTGAGTTGACAAATGAAAATGTGCGCGTGACGTTGATTTTTGAGCCTATACATACTGCTCTGCTTCAAAACGAAATTGTTGTAATCACCTATATTATAAGAAAAATGATTGATGGACACCAATGTCAATCTACCACTAGAGAGAGAAAAAGAGAGATGAGAGAAAAGTGATAAAATAATGTGATATGTGATGTGATGGTTAGAGAGAAATAGAGAGAAATGAGAGGTGTTAGATGGGTAGATATATTTTTTAGATGTATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	150613	152382	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007436.1	PF04535.7	DUF588	35	171	1.90E-29
Glyur000103s00007436.2	PF04535.7	DUF588	11	109	7.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.532
SRR1783600	control	13.469
SRR1783602	moderate drought stress	15.211
SRR1811619	moderate drought stress	15.054

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.569
DRR006520	Root Summer glycyrrhizin high producing strain	12.013
DRR006521	Root Winter glycyrrhizin high producing strain	11.039
DRR006522	Root Winter glycyrrhizin high producing strain	11.421
DRR006523	Root Summer glycyrrhizin low producing strain	10.806
DRR006524	Root Summer glycyrrhizin low producing strain	10.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.391

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.109
SRR2868004	Drought Stress (root)	5.451
SRR2967015	Control (root)	10.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.095
SRR9715740	Leaf	4.232
SRR9715741	Leaf	5.726
SRR9715739	Root	23.362
SRR9715742	Root	19.634
SRR9715743	Root	19.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.193
SRR8749028	MeJA induced 9h	6.571
SRR8749029	MeJA induced 9h	8.672
SRR8749030	Uninduced	2.441
SRR8749031	Uninduced	1.596
SRR8749032	Uninduced	2.319

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.357
SRR8400027	Control - Root	18.798