Gene detail

Gene detail information of Glyur000103s00007434.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55400.1	0	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)
NR	XP_004497294.1	0	PREDICTED: methionine--tRNA ligase-like [Cicer arietinum]
COG	YP_007170058.1	0	methionyl-tRNA synthetase [Halothece sp. PCC 7418]
Swissprot	tr\|Q9ZTS1\|SYM_ORYSJ	6.00E-48	Probable methionine--tRNA ligase
trEMBL	tr\|I1LFC1\|I1LFC1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G43550.1}

Sequence

Transcript Sequence

>Glyur000103s00007434.1
ATCCGAACTGAAGGAAAGAATGGCATNGTACTTGTGAACAACACAGAACAGCAAAATCTCAGAAGTGAGAAGCGATGGCAGTGAGAATGAACTGTTCCTTACAGAACACCCTCTGCCTCCTTAACCCTTCCTTCCTCTCCCTCCGNTCCAGAGCTTCTCACCTCAAGCCCAAGCCCAAGCCCCATTTGCAGTTCGCCTCAAACCCTTCTCGAGGAGGAGGAGCTTTGTTCTGCACCTGCACCACCACCAATACTCCCTCAAATGACGAACCCTTTGTCCTCACCACCCCTCTCTACTACGTCAACGCCCCTCCCCATATGGGTAGCGCCTACTCCACCATCGCCGCCGATGCCATTGCTCGCTTCCAGCGGCTATTGGGAAAGAAAGTTATATTTATTACTGGCACGGATGAGCATGGGGAGAAAATTGCAACTGCTGCCATGGCCCAGGGTTCCACCCCTCGTGACCATTGCAATCTCATATCAGAAGCTTACAAAACCCTTTGGAAAGATTTAGATATTTCGTANGACAAGTTCATTAGAACAACTGATAGCAAGCACGAGGCAATTGTGAAGGAATTTTATTCGAGAGTGCTCGCCAATGGTGACATTTACCGAGCTGATTATGAGGGACTTTATTGTGTCAACTGTGAGGAATATAAGGATGAGAANGAACTGCTTGATAATAATTGCTGTCCAGTGCACCTAAAGCCTTGTGTTTCAAGGAAAGAGGACAATTACTTTTTTGCACTGTCAAAATATCAAAAGTCATTGGAGGAAACTTTGAATAAAAATCCAAATTTTGTGCAGCCATCTTACCGTTTAAATGAGGTTCAAAGCTGGATCAAAAGTGGCCTGAGGGACTTTTCCATTTCCCGAGCTTCAGTTGATTGGGGCATCCCTGTTCCGAACGACAAGACTCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTATATATCAGCACTATCTGATGACCAGGAACAACCTGATTTACTAAATGTTGTTTCTTCAGGTTGGCCAGCTTCACTGCACTTAATTGGTAAGGATATTCTACGTTTTCATGCTGTATATTGGCCAGCAATGCTAATGTCTGCTGGACTAAGCCTTCCCAAAATGGTATTTGGACATGGATTCTTGACAAAGGATGGCATGAAGATGGGCAAGTCACTAGGGAATACACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCNGTTAGATACTTCTTCCTCAGAGAGGTGGAATTTGGCAATGATGGGGACTATTCAGAGGAACGCTTCATCAATATTGTAAATGCACATCTTGCTAATACAATCGGAAATCTTCTTAATCGGACGCTAGGACTTCTGAAAAAGAACTGCCAATCAACTCTGGTGGTGGATTCCACTACTGCTGCAGAAGGAAATGCATTCAAGGACAATGTAGAGAGGCTGGTTGAGAAAGCTCGTATTCACTATGAAAATCTCTCCNTGTCATCAGCTTGTGAGGCTGTTCTGGAGATTGGCAATGTTGGTAATTCCTATATGGATGAGCGTGCGCCATGGTCTCTCTTTAAGCAAGGGGGTACTGCTTCTGAAGCAGCTGCTAGGGACCTTGTAATTATATTGGAGACAGTGAGAATAATTGCCATTGCACTATTTCCTGTCACTCCGGGCTTGAGTTGGAGAATATATGCACAACTTGGCTATTCCAGGGACCAATTTGATGCAACAACCTGGGGAGACACCAAGTGGGGTGGGCTTAAGGGTGGCCAGGTGATGGCTCAACCCAAACCAGTCTTTGCTAGGATTGAAAACCAAACTGAAGTGGAAGAAGACAAAGACAAAGGGGTTGCAGTCGGAAAGACCGTGAAACGTAAGGGGAAGTTGAAACAAGCTCAAGAAGTTGCTGGGGCTTAGATGCTTTTCCCTTTTCTGAATTCTTTTTTGTTTTCACCACCTTAATGTAAAACTATTTCTTTTGCTAATACATGCACACAAATATTTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	138688	143928	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01874	MARS, metG	EC:6.1.1.10	Selenocompound metabolism	map00450
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006431 methionyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004825 methionine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007434.1	PF09334.6	tRNA-synt_1g	68	426	3.90E-122

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.280
SRR1783600	control	11.350
SRR1783602	moderate drought stress	8.660
SRR1811619	moderate drought stress	8.574

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.151
DRR006520	Root Summer glycyrrhizin high producing strain	10.045
DRR006521	Root Winter glycyrrhizin high producing strain	7.312
DRR006522	Root Winter glycyrrhizin high producing strain	7.190
DRR006523	Root Summer glycyrrhizin low producing strain	8.788
DRR006524	Root Summer glycyrrhizin low producing strain	8.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.819
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.304
SRR2868004	Drought Stress (root)	15.612
SRR2967015	Control (root)	14.908

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.593
SRR9715740	Leaf	29.533
SRR9715741	Leaf	20.969
SRR9715739	Root	2.996
SRR9715742	Root	7.033
SRR9715743	Root	6.676

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.731
SRR8749028	MeJA induced 9h	9.987
SRR8749029	MeJA induced 9h	5.944
SRR8749030	Uninduced	3.736
SRR8749031	Uninduced	2.004
SRR8749032	Uninduced	1.394

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.189
SRR8400027	Control - Root	16.476