Gene detail information of Glyur000103s00007427.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37430.1 | 2.00E-25 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_003552680.1 | 9.55E-62 | PREDICTED: zinc finger protein ZAT11-like [Glycine max] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 4.00E-34 | Zinc finger protein ZAT5 |
| trEMBL | tr|I1JDR7|I1JDR7_SOYBN | 6.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G10490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 80385 | 81020 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007427.1 | PF13912.1 | zf-C2H2_6 | 60 | 85 | 2.50E-10 |
| Glyur000103s00007427.1 | PF13912.1 | zf-C2H2_6 | 109 | 133 | 5.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.573 |
| SRR1783600 | control | 3.119 |
| SRR1783602 | moderate drought stress | 5.948 |
| SRR1811619 | moderate drought stress | 6.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.175 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.429 |
| SRR2868004 | Drought Stress (root) | 85.611 |
| SRR2967015 | Control (root) | 61.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.769 |
| SRR9715740 | Leaf | 10.332 |
| SRR9715741 | Leaf | 20.667 |
| SRR9715739 | Root | 28.329 |
| SRR9715742 | Root | 10.253 |
| SRR9715743 | Root | 12.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.298 |
| SRR8749028 | MeJA induced 9h | 160.411 |
| SRR8749029 | MeJA induced 9h | 102.609 |
| SRR8749030 | Uninduced | 47.648 |
| SRR8749031 | Uninduced | 189.335 |
| SRR8749032 | Uninduced | 104.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.911 |
| SRR8400027 | Control - Root | 18.503 |