Gene detail information of Glyur000103s00007421 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55340.1 | 2.00E-61 | phragmoplastin interacting protein 1 |
| NR | XP_003536770.1 | 8.46E-158 | PREDICTED: nucleolin 2-like [Glycine max] |
| COG | YP_006721585.1 | 9.00E-09 | RNA-binding protein [Geobacter metallireducens GS-15] |
| Swissprot | tr|Q7XTT4|NUCL2_ORYSJ | 2.00E-16 | Nucleolin 2 |
| trEMBL | tr|I1LFC9|I1LFC9_SOYBN | 3.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 59720 | 62260 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007421.1 | PF00076.17 | RRM_1 | 192 | 258 | 1.90E-14 |
| Glyur000103s00007421.1 | PF14259.1 | RRM_6 | 289 | 357 | 9.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.522 |
| SRR1783600 | control | 12.563 |
| SRR1783602 | moderate drought stress | 18.395 |
| SRR1811619 | moderate drought stress | 18.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.355 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.695 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.890 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.459 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.463 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.141 |
| SRR2868004 | Drought Stress (root) | 17.353 |
| SRR2967015 | Control (root) | 16.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.278 |
| SRR9715740 | Leaf | 4.301 |
| SRR9715741 | Leaf | 4.833 |
| SRR9715739 | Root | 0.701 |
| SRR9715742 | Root | 5.693 |
| SRR9715743 | Root | 4.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.735 |
| SRR8749028 | MeJA induced 9h | 28.439 |
| SRR8749029 | MeJA induced 9h | 26.034 |
| SRR8749030 | Uninduced | 2.067 |
| SRR8749031 | Uninduced | 0.759 |
| SRR8749032 | Uninduced | 1.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.831 |
| SRR8400027 | Control - Root | 15.686 |