Gene detail information of Glyur000103s00007420 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39490.1 | 5.00E-63 | F-box family protein |
| NR | XP_004497304.1 | 0 | PREDICTED: F-box protein At2g39490-like [Cicer arietinum] |
| Swissprot | tr|Q5S4V7|FB129_ARATH | 9.00E-74 | F-box protein At2g39490 |
| trEMBL | tr|A0A072VST6|A0A072VST6_MEDTR | 0 | F-box plant-like protein {ECO:0000313|EMBL:KEH44483.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 55888 | 57664 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007420.1 | PF00646.28 | F-box | 9 | 46 | 8.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.800 |
| SRR1783600 | control | 7.142 |
| SRR1783602 | moderate drought stress | 7.913 |
| SRR1811619 | moderate drought stress | 7.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.492 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.418 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.859 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.790 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.710 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.891 |
| SRR2868004 | Drought Stress (root) | 14.474 |
| SRR2967015 | Control (root) | 24.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.283 |
| SRR9715740 | Leaf | 1.014 |
| SRR9715741 | Leaf | 0.516 |
| SRR9715739 | Root | 4.340 |
| SRR9715742 | Root | 5.534 |
| SRR9715743 | Root | 5.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.547 |
| SRR8749028 | MeJA induced 9h | 14.259 |
| SRR8749029 | MeJA induced 9h | 1.810 |
| SRR8749030 | Uninduced | 13.764 |
| SRR8749031 | Uninduced | 22.444 |
| SRR8749032 | Uninduced | 3.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.299 |
| SRR8400027 | Control - Root | 12.371 |