Gene detail information of Glyur000103s00007417 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39470.1 | 2.00E-58 | PsbP-like protein 2 |
| NR | AFK35542.1 | 1.18E-125 | unknown [Medicago truncatula] |
| Swissprot | tr|O80634|PPL2_ARATH | 6.00E-75 | PsbP-like protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I3S5K0|I3S5K0_MEDTR | 4.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:AFK35542.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 43070 | 45532 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007417.1 | PF01789.11 | PsbP | 108 | 187 | 5.90E-12 |
| Glyur000103s00007417.1 | PF01789.11 | PsbP | 186 | 250 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 87.018 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 82.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.520 |
| SRR2868004 | Drought Stress (root) | 0.367 |
| SRR2967015 | Control (root) | 0.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.639 |
| SRR9715740 | Leaf | 79.692 |
| SRR9715741 | Leaf | 30.149 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.087 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.002 |
| SRR8749029 | MeJA induced 9h | 0.042 |
| SRR8749030 | Uninduced | 0.086 |
| SRR8749031 | Uninduced | 0.145 |
| SRR8749032 | Uninduced | 0.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.049 |
| SRR8400027 | Control - Root | 0.121 |