Gene detail information of Glyur000102s00010968 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19330.1 | 6.00E-104 | plant intracellular ras group-related LRR 6 |
| NR | XP_007154692.1 | 0 | hypothetical protein PHAVU_003G139800g [Phaseolus vulgaris] |
| COG | YP_007121991.1 | 7.00E-32 | hypothetical protein Mic7113_2802 [Microcoleus sp. PCC 7113] |
| Swissprot | tr|O64566|PIRL6_ARATH | 8.00E-169 | Plant intracellular Ras-group-related LRR protein 6 |
| trEMBL | tr|V7CCT4|V7CCT4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW26686.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00102 | 295278 | 300492 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000102s00010968.1 | PF00560.28 | LRR_1 | 66 | 81 | 0.023 |
| Glyur000102s00010968.1 | PF13855.1 | LRR_8 | 90 | 144 | 6.50E-08 |
| Glyur000102s00010968.1 | PF13855.1 | LRR_8 | 157 | 212 | 1.20E-06 |
| Glyur000102s00010968.1 | PF12799.2 | LRR_4 | 229 | 264 | 7.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.677 |
| SRR1783600 | control | 3.735 |
| SRR1783602 | moderate drought stress | 5.367 |
| SRR1811619 | moderate drought stress | 5.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.252 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.722 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.705 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.070 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.726 |
| SRR2868004 | Drought Stress (root) | 23.488 |
| SRR2967015 | Control (root) | 58.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.270 |
| SRR9715740 | Leaf | 16.297 |
| SRR9715741 | Leaf | 16.252 |
| SRR9715739 | Root | 30.292 |
| SRR9715742 | Root | 43.034 |
| SRR9715743 | Root | 34.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.016 |
| SRR8749028 | MeJA induced 9h | 4.901 |
| SRR8749029 | MeJA induced 9h | 1.437 |
| SRR8749030 | Uninduced | 10.215 |
| SRR8749031 | Uninduced | 1.768 |
| SRR8749032 | Uninduced | 4.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.631 |
| SRR8400027 | Control - Root | 12.732 |