Gene detail

Gene detail information of Glyur000102s00010966

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57110.2	0	autoinhibited Ca2+ -ATPase, isoform 8
NR	XP_006600468.1	0	PREDICTED: calcium-transporting ATPase 8, plasma membrane-type-like isoform X2 [Glycine max]
COG	YP_004971639.1	1.00E-163	plasma-membrane calcium-translocating P-type ATPase [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|Q9LF79\|ACA8_ARATH	0	Calcium-transporting ATPase 8, plasma membrane-type
trEMBL	tr\|I1MSK0\|I1MSK0_SOYBN	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000102s00010966.1
GGAACTATGAGTTTCTTCAAGGATTCTCCTGGCGGAAACCAGACACAGCGTGATTTAGAGTCTGGCTCTCCCAATAGCCGCTCTGCTGATTTTGATGGCGAAGACTACTCGTCCGATCCATTTGAGATTAGCAGAACAAAGAATGCTTCCGTTCAACGACTCAAGCGTTGGAGGCAAGCCGCACTTGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAGCAAGTATTGAGAATGATCATAGTGCATATACGAGCCATTCAAGCAGCATATCGTTTCAAGGAAGCTGAGAAGAACACGAATGGAACCATAGTACCTCCTTCAAGCTCCATCGGAGAGTTTTCAATTGGACAAGAGCAACTTTCTTCAATCTCAAGGGAGCATGATACTACTGCTCTAAGGGAATATGGAGGGGTTGTAGGGTTGTCACATATGTTGAAAACCAATTTAGAGAAAGGGATTCAAGGTGATGATACTGACTTGGTAAAACGAAGGACTGCATTTGGTTCAAACAACTACCCGCGAAAGAAAGGAAGAAGTGTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCCATAGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCCATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAGCATAAAAGAGACATACATTTGCAGGTTATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCGATAAGCATTCTAAGGAACCTTTTCTGATGTCTGGTTGTAAAGTTGCAGATGGATGTGGCACTATGCTGGTAACTGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTGTTGGACTCTCTGTGGCTGTCATTGTTCTGACTGTGCTACTGGCCAGATATTTCTCTGGACATACAAAAAACGCAGATGGAAGTGTTCAATTTATAGCAGGCAAGACCAGGGTTGGTGATGCTATTGATGGAGTAATTAAGATTTTCACTATAGCGGTCACCATTGTAGTGGTCGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCTACAACAATTTGCAGTGATAAGACTGGAACATTGACCATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTGTTCCTCTTCACGATAAGTCACAGCTCTCTCCTATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTATTTATGTACCTGAGGGTGGTAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATCTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTGCCAGATCAGAATCAGCAATTATCCATGTCTTTCCATTCAATTCAGACAAAAAACGAGGCGGAGTTGCACTACAGACACCTGATGCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTTGCCTGCTGCACTTGGTATTTTGATACAAATGATCAGTTAGTGGAAATGGATGAAGAGAAGATGACAGTTTTTAAAAAAGTTATTGAAGATATGGCTGCTGATAGTCTACGTTGTATTGCGATTGCATATAGATTATATGAAATGGAGAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCGTTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAACTTTGTCAAAAAGCTGGTGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTTGCTGANGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGTGCCTTGTCAGATGAAGAGAGAGAAGAAATTGTTGAAAGGATCTCGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTACATGAGGCCGATATAGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAANTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGATCGGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATGTTGTTGCTGCATTTTCCTCTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCGTTGGCAACTGAACCACCAACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTAACAAATGTTATGTGGAGGAATCTGCTGATTCAGGCAATGTACCAAGTATCTGTCTTGCTTATACTCAATTTCCGAGGCAGGAGCATACTGGGTCTGAGGCACGAGACCTACGACTTTGCAGTCAAAGTGAAGAACACTCTGATATTCAACGCATTTGTTCTTTGTCAAGTCTTCAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATATTCAAGGGGGTTACCAGAAACTACCTCTTTATGGGGATAGTGGGATTAACTATCGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGCAGCAGTGGCTCATCTCTGTCATTATAGGATTTATCAGCTGGCCTCTTGCCGTGGTTGGAAAACTGATACCAGTACCAACAACTCCCATGAATAACATTTTTCGAAGATTTCGCCGTCGAAGAACATAAAGAAGGATGGAATCTGAAGCTTCTCTATAGAGTCATGTATAGGCTTCTTGCTGATTCACTCTCTCCCTGCCGTCTCCTTTACTTAGACAGGAGGACTTCTGGTGATTGAAAATAGTATACTGGTTGTACATAGACGTTTCTTTTTGTACAGATTTGGAAATAAAGTTGGATTTGTTTTATGCCTAGGTTCCAACAAGGATATTTATAGAACTTCAGCCACTCTTTTTTC

Protein Sequence

>Glyur000102s00010966.1
MSFFKDSPGGNQTQRDLESGSPNSRSADFDGEDYSSDPFEISRTKNASVQRLKRWRQAALVLNASRRFRYTLDLKKEEERKQVLRMIIVHIRAIQAAYRFKEAEKNTNGTIVPPSSSIGEFSIGQEQLSSISREHDTTALREYGGVVGLSHMLKTNLEKGIQGDDTDLVKRRTAFGSNNYPRKKGRSVLMFIWDACKDLTLIILMVAAIASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEHKRDIHLQVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVDKHSKEPFLMSGCKVADGCGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIVGLSVAVIVLTVLLARYFSGHTKNADGSVQFIAGKTRVGDAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIVPLHDKSQLSPMLCSLLIEGVAQNTNGSIYVPEGGNGVEVSGSPTEKAILHWGFQLGMDFEAARSESAIIHVFPFNSDKKRGGVALQTPDAEIHIHWKGAAEIVLACCTWYFDTNDQLVEMDEEKMTVFKKVIEDMAADSLRCIAIAYRLYEMENVPTSEEELAHWSLPEDDLVLLAIVGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFAXATEPNIIEGKTFRALSDEEREEIVERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDXFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSSGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNVMWRNLLIQAMYQVSVLLILNFRGRSILGLRHETYDFAVKVKNTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTIVLQIVIIEFLGKFTKTVKLNWQQWLISVIIGFISWPLAVVGKLIPVPTTPMNNIFRRFRRRRT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00102	272142	285072	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005516 calmodulin binding

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000102s00010966.1	PF12515.3	CaATP_NAI	34	79	2.10E-17
Glyur000102s00010966.1	PF00690.21	Cation_ATPase_N	145	211	1.40E-10
Glyur000102s00010966.1	PF00122.15	E1-E2_ATPase	230	478	3.40E-61
Glyur000102s00010966.1	PF00702.21	Hydrolase	483	808	4.90E-30
Glyur000102s00010966.1	PF00689.16	Cation_ATPase_C	879	1056	2.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.038
SRR1783600	control	13.181
SRR1783602	moderate drought stress	13.729
SRR1811619	moderate drought stress	13.669

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.107
DRR006520	Root Summer glycyrrhizin high producing strain	6.128
DRR006521	Root Winter glycyrrhizin high producing strain	1.262
DRR006522	Root Winter glycyrrhizin high producing strain	1.139
DRR006523	Root Summer glycyrrhizin low producing strain	7.421
DRR006524	Root Summer glycyrrhizin low producing strain	7.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.250

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.292
SRR2868004	Drought Stress (root)	12.563
SRR2967015	Control (root)	13.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.212
SRR9715740	Leaf	18.895
SRR9715741	Leaf	18.151
SRR9715739	Root	8.735
SRR9715742	Root	23.522
SRR9715743	Root	20.927

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.973
SRR8749028	MeJA induced 9h	7.584
SRR8749029	MeJA induced 9h	3.843
SRR8749030	Uninduced	2.651
SRR8749031	Uninduced	1.005
SRR8749032	Uninduced	1.835

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.166
SRR8400027	Control - Root	22.701