Gene detail

Gene detail information of Glyur000102s00010965

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57120.1	4.00E-20
NR	XP_006593508.1	1.24E-153	PREDICTED: nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Glycine max]
trEMBL	tr\|I1LVL1\|I1LVL1_SOYBN	5.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G00430.2}

Sequence

Transcript Sequence

>Glyur000102s00010965.1
GGCCTATAAGTCAATAGCCTATGTTAAAAAACATAGCTTGTTTTTTGGTCAAATAAACATAGCCTATGTAAAAATGTCGAGAATGCAATTANATGGGGCTAGGCCCGTACCCGTATGTAGCGGATGGGTCGGGAAGAAACCCTAAAATAAACCCTAACAAGTTCTTCACCAGGTTGCAGGGGGATTATTATAGTTAGAGTTTTGTGAGGTTGACACACAAGAGAACAGGGTTGGAGAATCCGTGTCGCATGCCTGCAACTCCACCATCGAGTCACAAAGGAAGTTCAACCCTCTTCTCTTTCACCCCTCGCCAAGTTCTGTTATTGAGCAACCAAACCATGAAGCACGGTGCTGACAACTCGAAACGGGAGCAGCAGAAGCTTCTCCTTCACCAATCAATTGCCCATTACTTGGAGCGCTGTGGCTTCTCTAAGACCCTCAAAAAATTTCGTTCTGAAGCCCAAATCGAGAAAGATAATCCGGAGGGCTCCCCGGTTGATCTAGAAGAAATGTGCCTCAAATATTTAGAAATATGTAGCAAGGATGCTAAGTCAAATATCAATGATCAAAAGGAGCAAGGTGTGCACTCCAAAGACAAAGAGGGAAAATCCAAGGAAAAGAAGAAAAAGAAAAGCAAGTCAGTTTCTGAATCTCTTGCTAATAACATGGAAGATAACCAATTGGAGTCACCGACTATGGTTACAGAAAAAAAAGTTAAGGATGATTTATCCACTGATGCCATAGTTGATAATGGTGCTGAGACANAGAAGAAATCCAAGCATAAAATGAAAAAGAAAGATAAGTCAAATAGTGAAGGAGATGCAATAGAGCAGATTGGAGATCCTGATGTAACTGTTTCAAAAAAAGAGAATTTCAAAACATCAAACAAAGAAGTGACACACGAGGAAAAGAAAGATTCTAAGAAAAGAAAAAGACCAAATGCTGAAGAAAATGGTAATCAGGTTACTGAAATAAAGGCAGATGAAGAAACCAAACGCAGAAAAAAATCCAAGGGAGAAGAGCAATCANCAAAAACCAATGCAAACCTGGGAAGTGATTTACATTCTAATAAAGAAAATAATGTGGTAAGCGGTCAAGATACTGAGGGTCAGTTACAGAAGGCATCTGATGAGCAAACTAATGGAAAGACAAATGGGTACCATGAGAACAGTGCAGAGAAATCTTCTGTGCAGAGGTCTCAGAAGAAACAACACAAGGGATCAGTCGAGCAAAAACCAGTGAAGACGGCATTTCAGCGAGTACAAGTTGAAAAGATAGAATTTGTTGATGAGAGGCTTCAGGATAACTCTTATTGGGCAAAGGATGGTGCTGACACTGGTTATGGTGCAAAAGCAGAAGAAATTCTTGGCCAAGTTAGAGGAAGGGATTTTCGTCATGAGAAGACCAAGAAAAAACGTGGCACCTATCGGGGAGGACAGATTGATTTGCAATCCCATTCAGTTAAGTTTAATTATTCAGATGAAGACTGACTGGGATACACAGATTTTTTTTTGCCTCTTTTCTTGTCAAGGAAAATTCTTTTGATGTTTGCTACTGGGGCGCTATGCTAAAGCAGGCGTTGCCATGATAATTTTGCTTAATTATGTTGCACTGAAACAATATTGTTCTTTTAGACTGTTATTTCAACGTTTTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00102	262179	266417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000102s00010965.1	PF05022.7	SRP40_C	334	407	7.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.640
SRR1783600	control	56.154
SRR1783602	moderate drought stress	68.468
SRR1811619	moderate drought stress	68.138

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	106.284
DRR006520	Root Summer glycyrrhizin high producing strain	106.523
DRR006521	Root Winter glycyrrhizin high producing strain	45.440
DRR006522	Root Winter glycyrrhizin high producing strain	43.594
DRR006523	Root Summer glycyrrhizin low producing strain	116.536
DRR006524	Root Summer glycyrrhizin low producing strain	117.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.604
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.519

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.559
SRR2868004	Drought Stress (root)	44.614
SRR2967015	Control (root)	46.811

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.605
SRR9715740	Leaf	19.692
SRR9715741	Leaf	19.886
SRR9715739	Root	1.625
SRR9715742	Root	13.536
SRR9715743	Root	12.012

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	99.981
SRR8749028	MeJA induced 9h	63.373
SRR8749029	MeJA induced 9h	94.590
SRR8749030	Uninduced	35.143
SRR8749031	Uninduced	27.541
SRR8749032	Uninduced	25.968

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.785
SRR8400027	Control - Root	45.722