Gene detail

Gene detail information of Glyur000102s00010960.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52760.1	6.00E-157	lysophospholipase 2
NR	XP_003542674.1	0	PREDICTED: caffeoylshikimate esterase [Glycine max]
COG	YP_003571913.1	5.00E-41	lysophospholipase [Salinibacter ruber M8]
Swissprot	tr\|Q9C942\|CSE_ARATH	0	Caffeoylshikimate esterase
trEMBL	tr\|G7JTB1\|G7JTB1_MEDTR	0	Monoglyceride lipase-like protein {ECO:0000313\|EMBL:AES92235.1}

Sequence

Transcript Sequence

>Glyur000102s00010960.1
ATGGCGCCGGAACAGGTATCGGAGGTTCCACCGAATTTCTGGGGCGACATGCCCGAAGAGGAGTACTACACCTCCCAAGGGGTGCGAAACACCAAATCATACTTCGACACACCCAACGGCAAACTCTTCACCCAGAGCTTCCTCCCACTAAACCTCCAACCCAGCGAAGTCAAAGCCACCGTCTTCATGACCCACGGCTACGGCTCCGACACCGGCTGGCTCTTCCAGAAGATCTGCATCAACTTCGCCACGTGGGGCTACGCCGTCTTCGCCGCCGACATCCTCGGCCACGGCCGTTCCGACGGCCTCCGTTGCTACCTCGGCGACATGGACAAGATCGCATCCACCTCCCTCTCCTTCTTCCTCCACGTGCGCCGCAGCAGCCCCTACAACACCCTCCCTGCGTTCCTCTTCGGCGAGTCCATGGGTGGACTCGCCACACTCCTCATGTACCTCCAATCGGAGCCCGACACGTGGACGGGCCTGATATTNTCTGCGCCGCTCTTCGTGATCCCCGAGGACATGAAACCAAGCAGGGTTCATTTGTTCCTGTACGGTCTATTGTTCGGTCTTGCCGACACGTGGGCGGCGATGCCCGATAACAAGATGGTCGGAAAAGCCATTCGGGATCCGAACAAGTTGAAGATCATAGCGTCGAATCCGAGGAGGTACACGGGCCCACCTAGGGTGGGGACCATGAGGGAGCTACTTAGGGTCACGCAGTACGTGCAGGATAACTTCTCCAAGGTAACGGCGCCGTTTCTAACCGCTCACGGAACCGCTGACGGTGTCACGTGCCCTTCCTCGTCCAAGCTATTGTATGAGAGGGCCTCCTCTCAGGACAAGACCTTGAAGCTTTATGATGGGATGTATCATTCGTTGATTCAGGGGGAGCCTGATGAGTCTGCAAATCTTGTGTTGGGGGATATGAGGGAGTGGATTGATGAAAGGGTTCGAAGGTACGGTGGGCCTAATAACAATTCTCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00102	237935	238924	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18368	CSE	EC:3.1.1.-	Phenylpropanoid biosynthesis	map00940

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000102s00010960.1	PF12695.2	Abhydrolase_5	61	293	1.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	89.585
SRR1783600	control	94.305
SRR1783602	moderate drought stress	119.588
SRR1811619	moderate drought stress	125.380

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	68.914
DRR006520	Root Summer glycyrrhizin high producing strain	69.168
DRR006521	Root Winter glycyrrhizin high producing strain	48.547
DRR006522	Root Winter glycyrrhizin high producing strain	46.908
DRR006523	Root Summer glycyrrhizin low producing strain	45.520
DRR006524	Root Summer glycyrrhizin low producing strain	44.020
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.600

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	158.668
SRR2868004	Drought Stress (root)	141.895
SRR2967015	Control (root)	139.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.262
SRR9715740	Leaf	75.394
SRR9715741	Leaf	95.661
SRR9715739	Root	206.776
SRR9715742	Root	131.959
SRR9715743	Root	129.513

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.838
SRR8749028	MeJA induced 9h	71.415
SRR8749029	MeJA induced 9h	37.003
SRR8749030	Uninduced	79.985
SRR8749031	Uninduced	41.194
SRR8749032	Uninduced	94.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	131.454
SRR8400027	Control - Root	87.162