Gene detail information of Glyur000102s00010952 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26000.1 | 5.00E-125 | RNA-binding KH domain-containing protein |
| NR | XP_004507898.1 | 0 | PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] |
| Swissprot | tr|P58223|Y4837_ARATH | 5.00E-15 | KH domain-containing protein At4g18375 |
| trEMBL | tr|I1LVL8|I1LVL8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G00510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00102 | 193772 | 198037 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000102s00010952.1 | PF00013.24 | KH_1 | 47 | 98 | 5.10E-10 |
| Glyur000102s00010952.1 | PF00013.24 | KH_1 | 138 | 203 | 1.30E-10 |
| Glyur000102s00010952.1 | PF00013.24 | KH_1 | 312 | 372 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.693 |
| SRR1783600 | control | 49.449 |
| SRR1783602 | moderate drought stress | 106.698 |
| SRR1811619 | moderate drought stress | 105.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 104.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 102.810 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 102.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 99.514 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 100.482 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 100.374 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.071 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.690 |
| SRR2868004 | Drought Stress (root) | 52.782 |
| SRR2967015 | Control (root) | 65.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.994 |
| SRR9715740 | Leaf | 34.333 |
| SRR9715741 | Leaf | 34.730 |
| SRR9715739 | Root | 143.350 |
| SRR9715742 | Root | 107.108 |
| SRR9715743 | Root | 110.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.621 |
| SRR8749028 | MeJA induced 9h | 26.560 |
| SRR8749029 | MeJA induced 9h | 26.180 |
| SRR8749030 | Uninduced | 18.048 |
| SRR8749031 | Uninduced | 12.377 |
| SRR8749032 | Uninduced | 25.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 76.727 |
| SRR8400027 | Control - Root | 77.060 |