Gene detail

Gene detail information of Glyur000101s00010345

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11480.1	2.00E-108	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003522687.1	3.22E-171	PREDICTED: GTP-binding protein At2g22870-like isoform X1 [Glycine max]
COG	YP_003091260.1	6.00E-60	HSR1-like GTP-binding protein [Pedobacter heparinus DSM 2366]
Swissprot	tr\|O81004\|Y2287_ARATH	2.00E-100	GTP-binding protein At2g22870
trEMBL	tr\|K7KIU1\|K7KIU1_SOYBN	1.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G08470.3}

Sequence

Transcript Sequence

>Glyur000101s00010345.1
AGAAACGACNTCGTCTCGTTTGCTGGATTGCTCTCGTTTGAGATATTTGCACACAGTGACTGTGAGCGATGCCTTGTAGTTGCATACAGTGTGCAGCTCTCCCCCTCTCCGTTGCCCAGGATAACAATAAGAGGGAGATGGTTCTCCTTCACCTCCCAACAAGGTTCCCTTTCTCCTCTTTAACTTCATATCCTTCTCTCTCTCTCCGAGCCTATTCCACACTCTTACATCATCCACCAAAATCCACCCTCACCACCTCAGAACCCACACCCATAACCCCATCCCCTACAGAGTTGTCCCTCGAGAAGCTCTTTGTTCCGCCGGAGACACGTGTCTCCCTCGACGGCGCCAGAGTCCTGAACGGTTCCAACATATTGCTGAGTGACTACGCCGGAGATGCTCGTGTCCTGAAAGCCGATTTCATCAAAAGCAGCGTCAGAACCGAAGATTGCCCCTCCGATGGCCTTCCCGAGTTCGCTCTCGTTGGACGCTCCAACGTCGGCAAATCTTCGCTCCTCAATTCCCTCGTGCGCCGCCACAAACTCGCCTTAACGTCAAAGAAACCTGGCAAGACGCAATGCATTAACCATTTTCTGATTAATGATAGCTGGTACCTGGTTGATTTACCTGGATATGGGTATGCATCTGCACCGCAGGAACTTAGAATGGATTGGGAAAAATTCACCAAAGACTATTTCCTCAACCGGTCGACCTTAGTTTCAGTTTTCCTTCTAATAGATGCTAGCATTCCTGCTAAAAAAATTGATCTTGAGTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAACGGAAGAAGAAAAAGAATGGAGGCAAAAGACCAGAAGATAATGTCAATGATTTTCAGGACTTGATACGTGGCTTCTTCCAAACAGTGCCTCCATGGATCATGACCAGTAGTGTCACCCATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTGCGGAACTACTGGCTCAAGCACTAGTTCATGGCATCATGTTGTCGAACTACTGGCTCAAGCACTAGTTCATGGCATCATGTTGTCAGAGCTGGTACGTAGATGTTGAATACTTAAGTGACTATAGATTTGAGTTGCTTTGTCTTTTTCTTCTCGGTAGTAGGGGAGACTCAATATATCCATCTGATGATTCAAATTCTAAATTCATCAAATTTCTCATGTTTATAGTAATAGAGAAATGGCGTTAAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00101	350240	353186	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000917 barrier septum assembly

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000101s00010345.1	PF01926.18	MMR_HSR1	136	253	5.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.260
SRR1783600	control	20.116
SRR1783602	moderate drought stress	28.433
SRR1811619	moderate drought stress	28.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.474
DRR006520	Root Summer glycyrrhizin high producing strain	22.100
DRR006521	Root Winter glycyrrhizin high producing strain	53.204
DRR006522	Root Winter glycyrrhizin high producing strain	52.356
DRR006523	Root Summer glycyrrhizin low producing strain	18.562
DRR006524	Root Summer glycyrrhizin low producing strain	18.732
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.832
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.256

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.005
SRR2868004	Drought Stress (root)	10.529
SRR2967015	Control (root)	17.198

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.173
SRR9715740	Leaf	21.538
SRR9715741	Leaf	12.961
SRR9715739	Root	8.078
SRR9715742	Root	11.634
SRR9715743	Root	8.733

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.081
SRR8749028	MeJA induced 9h	16.644
SRR8749029	MeJA induced 9h	15.876
SRR8749030	Uninduced	6.780
SRR8749031	Uninduced	3.160
SRR8749032	Uninduced	6.744

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.133
SRR8400027	Control - Root	12.181