Gene detail

Gene detail information of Glyur000101s00010343.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25620.1	9.00E-158	Flavin-binding monooxygenase family protein
NR	XP_003522685.1	0	PREDICTED: indole-3-pyruvate monooxygenase YUCCA6-like [Glycine max]
COG	NP_108142.1	1.00E-74	dimethylaniline monooxygenase [Mesorhizobium loti MAFF303099]
Swissprot	tr\|Q8VZ59\|YUC6_ARATH	0	Indole-3-pyruvate monooxygenase YUCCA6
trEMBL	tr\|I1JUR3\|I1JUR3_SOYBN	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}

Sequence

Transcript Sequence

>Glyur000101s00010343.1
ATGGACTATTGCCTGCGAGAAATAGAAGGAAAGCAAGCACATGATCCTTTATTCAACAAAGATAAAATGATGAATAACAACAACAAGAAGTCATCATCATCATCATCGAGATGTGTGTGGATTCCAGGGCCAGTGATTGTAGGAGCGGGTCCTTCAGGGCTAGCAGCAGCAGCATGTCTCAAAGAGAAAGGTGTCCCTTGTGTGATACTAGAGAGATCCAATTGCATAGCTTCTTTGTGGCAACTTAAAACCTATGATCGCCTTCGCCTTCATTTGCCAAAGCAATTCTGTGAACTTCCCTTCGTGGGGTTCCCTTCTGATTTCCCAACATACCCATCAAAGCAACAGTTCATAGAGTACTTGGAGTGTTATGCTGAGAGGTTTGGAATTAGGCCAAGGTTCAATGAGACGGTGAAGCATGCAGAGTTTGATGCCAGTATTAGGTGTTGGCGATTGAAATGTAGTAGTAGTAGTTCCAACAAGGCGGCGGGGGAGACGGCGACGGAGTATGTGTGCCGGTGGTTGATTGTGGCCACCGGAGAGAATGCGGAGGCNGTGGTGCCTGATCTTGAAGGGAAAGAGGAATTCGGAGGGCCCATAAGGCATACAAGCTTGTATAAGAGTGGTGAGGAGTTTAGAGGGAAGAGGGTTTTGGTGGTGGGGTGTGGAAATTCTGGCATGGAAGTGTGCTTGGATCTTTGTAACCATGATGCTACTCCATCTCTTGTGGTCAGGGATTCAGTACACGTCCTACCACGAGAGATGCTGGGGAAATCAACTTTCGGGTTGTCCATGTGGTTGCTCAAGTGGTTACCCATGCGACTTGTCGATCGGTTCTTGCTGATAGTGTCATGGCTTATGCTTGGTGACACTGCTCGACTCGGATTGGACCGGCCTCGTTTGGGTCCCCTTCAACTCAAAGACCTCTCAGGAAAGACCCCTGTGCTAGATGTGGGTACCCTTGCCAAGATTAAAGGTGGTGACATTAAGGTACGTTCAAGCATAAAGCGGCTAAAGCGTCATACAGTGGAATTTGTAGATGGAAGGGCAGAGAATTTTGATGCCATCATACTGGCAACTGGTTACAAAAGCAATGTACCCTACTGGCTCAAGGAAGAGGATATGTTCTGTAAGGAAGATGGGTTCCCTAGGAAGCCATTCCCAAATGGATGGAAAGGTGAAAATGGGCTCTATGCAGTGGGTTTTACCAAAAAAGGATTACTTGGTGCATCCATGGATGCCAAGAGAATAGCTGATGACATTGAACGGTGTTGGGAAGCCGAGGCAAAACATAGATATTAGAGACCTCCTTTTGCTCGCTCAATTTTGCCACAAGTCAAATCCAATCCACGTACAATTTATATTTGGTTTTGGCTAAGTCAGAGACACAACACAACAGAGAAGGGGTTGATATTTGGTCTTGACTAAGCCAGAGGCATTTATCGAGGAATATAAATTGATCGAAGTTGGTATACATGAATGAATGGAAACGGAGGCTTAATTAATTTTGGAGGTGCTTTGATATCAATCACACATGTGCACAATGCAATGCTAGCTAGTACCAAAGTGAAGCTCCTCCATTAATCCATGCATGGAGAAGTGGGCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00101	327619	330960	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11816	YUCCA	EC:1.14.13.168	Tryptophan metabolism	map00380

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004499 N,N-dimethylaniline monooxygenase activity

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000101s00010343.1	PF00743.14	FMO-like	46	369	1.90E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.362
SRR1783600	control	0.382
SRR1783602	moderate drought stress	0.251
SRR1811619	moderate drought stress	0.292

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.973
DRR006522	Root Winter glycyrrhizin high producing strain	0.896
DRR006523	Root Summer glycyrrhizin low producing strain	0.205
DRR006524	Root Summer glycyrrhizin low producing strain	0.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.596

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.711
SRR2868004	Drought Stress (root)	5.458
SRR2967015	Control (root)	5.697

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.775
SRR9715740	Leaf	0.729
SRR9715741	Leaf	0.622
SRR9715739	Root	0.029
SRR9715742	Root	0.038
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.899
SRR8749028	MeJA induced 9h	6.835
SRR8749029	MeJA induced 9h	6.344
SRR8749030	Uninduced	3.143
SRR8749031	Uninduced	8.267
SRR8749032	Uninduced	15.923

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.756
SRR8400027	Control - Root	0.636