Gene detail

Gene detail information of Glyur000101s00010331.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32660.1	1.00E-170	Protein kinase superfamily protein
NR	XP_004501199.1	0	PREDICTED: serine/threonine-protein kinase AFC3-like [Cicer arietinum]
COG	YP_004959349.1	8.00E-15	serine/threonine protein kinase [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|P51568\|AFC3_ARATH	0	Serine/threonine-protein kinase AFC3
trEMBL	tr\|I1K978\|I1K978_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08480.1}

Sequence

Transcript Sequence

>Glyur000101s00010331.2
GAGACAAAAAAAAAAGTATACACCGAACCCTAACGCCTTCTTCTGGTTTCGCGTTGGTCTGTCTGCAATCACGTTCTTCACTTTCGCCATAGCCAGCGATTTCTGAGTTGAAAAGAGGTTGCGAACATTCTCTTATGGTATCTGTCGGAACAAATCACATGGAAAGGGAACGAACCCGCAAACGCCCTCGTCTCGCCTGGGACGCAGCCCCTCCCCCACTCCCACAGGCACAAAGGGTTGTGGCGGTGGCGANTGACGAAGGAATCGAAAAAAAGCACGCCTCGCCTCCAAGGAGAGACGACGATCGTGATGGCCACTATGTCTATAATCTCGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAAATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGACCGCCAAAAGAGGGAGTATGTTGCCGTCAAGGTAATTAGAAGCATTCGGAAATATCGCGACGCCGCAATGCTCGAGGTTGATGTGCTTCAACGTCTAGCCAAGAATGATGTGGGAACCTCACGATCCGAAATTGATATGCATGAACTACACCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTACCTAGCTGTAAGAGGGTTTCCTCAGATGAAACACAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTCGATAATCAGATTCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCCGAGATTATTTTAGGTCTAGGGTGGTCATCCCCGTGCGATTTGTGGAGTGTTGGATGTATTCTCGTCGAACTATGCTCGGGAGAAGCATTGTTTCAGACTCACGAAAACTTGGAGCACCTGGCAATGATGGAGAGAGTCTTGGGACCTCTACCAGAGCACATGGTTCGAAGGGCCAAGGGTGCGGAAAAGTATTTCAAGCGGGGATCACGATTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATAAATGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGTCATGTAGAGTCCTCAAGGTCCTCATTAACTGATTTGTTACATGGCTTATTAACATATGATCCGAATGAACGCCTTACTGCTCGTCAATCCCTTGATCATCCCTTCTTTAGGATTCCAACTTAAGAAAAGCCAAATGCCTTTTGTTGTGGAATGATTCCCATTTTAAAGATTATCAATTGCACAGGCNACAGCTTAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00101	252255	255797	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000101s00010331.2	PF00069.20	Pkinase	74	126	3.80E-06
Glyur000101s00010331.2	PF00069.20	Pkinase	139	347	5.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.108
SRR1783600	control	20.162
SRR1783602	moderate drought stress	30.057
SRR1811619	moderate drought stress	29.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.112
DRR006520	Root Summer glycyrrhizin high producing strain	22.432
DRR006521	Root Winter glycyrrhizin high producing strain	37.280
DRR006522	Root Winter glycyrrhizin high producing strain	36.984
DRR006523	Root Summer glycyrrhizin low producing strain	23.744
DRR006524	Root Summer glycyrrhizin low producing strain	22.596
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.669
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.669

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.421
SRR2868004	Drought Stress (root)	28.541
SRR2967015	Control (root)	28.492

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.312
SRR9715740	Leaf	23.417
SRR9715741	Leaf	22.005
SRR9715739	Root	9.709
SRR9715742	Root	10.792
SRR9715743	Root	8.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.980
SRR8749028	MeJA induced 9h	23.521
SRR8749029	MeJA induced 9h	26.869
SRR8749030	Uninduced	30.145
SRR8749031	Uninduced	23.928
SRR8749032	Uninduced	28.169

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.269
SRR8400027	Control - Root	30.082