Gene detail information of Glyur000101s00010325 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20780.1 | 5.00E-14 | calmodulin like 42 |
| NR | AFK48297.1 | 2.28E-88 | unknown [Lotus japonicus] |
| COG | YP_007118813.1 | 2.00E-06 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9SVG9|CML42_ARATH | 5.00E-17 | Calcium-binding protein CML42 |
| trEMBL | tr|I3T705|I3T705_LOTJA | 9.00E-89 | Uncharacterized protein {ECO:0000313|EMBL:AFK48297.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00101 | 217070 | 217663 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000101s00010325.1 | PF13499.1 | EF-hand_7 | 133 | 195 | 5.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.719 |
| SRR1783600 | control | 0.630 |
| SRR1783602 | moderate drought stress | 2.933 |
| SRR1811619 | moderate drought stress | 3.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.096 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.092 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.365 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.183 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.676 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.091 |
| SRR2868004 | Drought Stress (root) | 13.416 |
| SRR2967015 | Control (root) | 20.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.036 |
| SRR9715740 | Leaf | 0.213 |
| SRR9715741 | Leaf | 0.220 |
| SRR9715739 | Root | 0.280 |
| SRR9715742 | Root | 0.194 |
| SRR9715743 | Root | 1.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.077 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.203 |
| SRR8749030 | Uninduced | 0.267 |
| SRR8749031 | Uninduced | 0.348 |
| SRR8749032 | Uninduced | 0.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.177 |
| SRR8400027 | Control - Root | 1.663 |