Gene detail

Gene detail information of Glyur000101s00010313

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31290.1	6.00E-90	ChaC-like family protein
NR	AFK43603.1	1.62E-150	unknown [Lotus japonicus]
COG	YP_005090774.1	3.00E-30	cation transporter ChaC [Oceanimonas sp. GK1]
trEMBL	tr\|I3STL1\|I3STL1_LOTJA	6.00E-151	Uncharacterized protein {ECO:0000313\|EMBL:AFK43603.1}

Sequence

Transcript Sequence

>Glyur000101s00010313.1
AGAAACTACTGGTAGATGATGGTATGGTGGGATTATTATAACCGGCAGGAGTATGACAGCATAGCAAGCACAGGGATGTGTGAGAGGCACGTGATAGACATGTTGTAGTTGGGGGAGGCCGTTGAATTCGTGTACCTCCCTCACGCCATAAATACCAAGCTTTCCTGAACGGAATGCCGCACGCCTTCCCCCGAGAGAAAGAGGAAGAAAGTTAGAATACAGAGAGAGANAGAGAAAGAGAAAGAGGGGAACATTCGCCAACCCTAATTTGCTAGTTAAACCCTTAACCCATTTACCGTTCCTCTCATTTCCCTCCCCCTTCTCTCTCGTGCCATCTCTGCCCTAAATTCTTTCTCATTTTCTCGGGAAAGTTCCCAGATCCAAATAAATCGTACAACCATGGTTTTCTGGGTTTTTGGCTATGGTTCACTGGTGTGGAACCCAGGATTTGAATACGATGAGAAAGTTATTGGTTTCATAAAGGACTATAGGCGTGTGTTTGATTTAGCATGCATTGATCACCGAGGAACACCTGAAAACCCTGCAAGAACTTGCACATTGGAGGAAAAAGAAGGGGCAATTTGCTGGGGAGCTGCTTATNGTGTCCAAGGAGGCCCTGAAAAGGAAAAACTGGTTATGCAGTATTTGGAGCGGCGGGAATGTGAATATGATCATAAGACTCTTGTAAACTTCTACAAGGAAGGAGATTCACTGCACCCTGCTCTTACTGGAGTCATAGTATTCACATCTACTCCAGACAAAGAAAACAACAAATACTACCTGGGACCTGCTCCGCTGGATGACATGGCTAGGCAAATAGCAACTGCTCATGGCCCTTGTGGAAACAACAGGGACTATCTTTTTCTTCTGGAAAAGGCCATGCATAATATTGGGCATGAGGACGACTTAGTGATAGAACTTGCCGATGAAGTGAGGAAAGTCCTTGGAGTGGGAAATGTACTACCAAACGACAAAAAATTGGTTGGGCCAGCACAACTTCAACACCCACCTCATGTACCCATTTCAACTCTTCAATTGCTTCCACTGCCAGAACCTATTGCTCTTGATAGTTGAGGGGCTGGAGCTGACTAAGAACTGATGCCGAGTTTGGCAACCAAACTGATTCACTGCGGACCCTGCTAACCCCATTCGTTTCCTAAATAATCATGTAGCTGTTCCACGTCTCCTAGTTTTAGCGGCTTTTTCAGCCATTCCCTCGAGNCATTGCTTAGATCCAATGTGACACATTTATGTTTTGAATTGGAATTGGAATTGGAATGTTCCCAGATGTTTTACACCTACAGTAATTAAAAGGGTTAATTTTCTATGTAGTTAGCGGCGATCTACATCAATGAAATGAGTTTCTCTGTTTTGCGCAAGTATTTGTCCATTTGTTTTTTTGTCTATTGGTTGGTGCACGTTTCGTTTACTTGACCGTTTGCTACGATGAAATCAACTTGCAATTGCTGTTATGCCACCATGGAAAACCCAGACTGGTGATCTTACTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00101	156976	160073	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000101s00010313.1	PF04752.7	ChaC	3	180	1.10E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.418
SRR1783600	control	14.559
SRR1783602	moderate drought stress	21.969
SRR1811619	moderate drought stress	22.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.350
DRR006520	Root Summer glycyrrhizin high producing strain	65.760
DRR006521	Root Winter glycyrrhizin high producing strain	8.858
DRR006522	Root Winter glycyrrhizin high producing strain	8.642
DRR006523	Root Summer glycyrrhizin low producing strain	65.026
DRR006524	Root Summer glycyrrhizin low producing strain	64.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.790

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	69.876
SRR2868004	Drought Stress (root)	87.275
SRR2967015	Control (root)	69.727

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.300
SRR9715740	Leaf	54.234
SRR9715741	Leaf	62.242
SRR9715739	Root	56.038
SRR9715742	Root	111.364
SRR9715743	Root	93.219

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	208.100
SRR8749028	MeJA induced 9h	94.255
SRR8749029	MeJA induced 9h	98.347
SRR8749030	Uninduced	243.037
SRR8749031	Uninduced	39.071
SRR8749032	Uninduced	82.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.745
SRR8400027	Control - Root	56.567