Gene detail information of Glyur000101s00010310 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20325.1 | 5.00E-88 | |
| NR | XP_006580916.1 | 9.52E-165 | PREDICTED: uncharacterized protein LOC100305835 isoform X1 [Glycine max] |
| trEMBL | tr|I1K961|I1K961_SOYBN | 4.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G08230.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00101 | 144255 | 147947 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000101s00010310.1 | PF09468.5 | RNase_H2-Ydr279 | 10 | 293 | 1.90E-44 |
| Glyur000101s00010310.2 | PF09468.5 | RNase_H2-Ydr279 | 10 | 268 | 7.80E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.257 |
| SRR1783600 | control | 3.210 |
| SRR1783602 | moderate drought stress | 2.275 |
| SRR1811619 | moderate drought stress | 2.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.158 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.784 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.114 |
| SRR2868004 | Drought Stress (root) | 11.812 |
| SRR2967015 | Control (root) | 11.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.851 |
| SRR9715740 | Leaf | 2.541 |
| SRR9715741 | Leaf | 2.316 |
| SRR9715739 | Root | 1.662 |
| SRR9715742 | Root | 3.542 |
| SRR9715743 | Root | 2.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.494 |
| SRR8749028 | MeJA induced 9h | 9.659 |
| SRR8749029 | MeJA induced 9h | 14.399 |
| SRR8749030 | Uninduced | 2.218 |
| SRR8749031 | Uninduced | 2.752 |
| SRR8749032 | Uninduced | 3.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.078 |
| SRR8400027 | Control - Root | 13.108 |