Gene detail

Gene detail information of Glyur000101s00010309

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31240.2	3.00E-116	protein kinase C-like zinc finger protein
NR	XP_003603563.1	0	Nucleoredoxin [Medicago truncatula]
COG	YP_003547979.1	6.00E-09	alkyl hydroperoxide reductase [Coraliomargarita akajimensis DSM 45221]
Swissprot	tr\|Q8VZQ0\|NRX3_ARATH	4.00E-143	Probable nucleoredoxin 3
trEMBL	tr\|G7J2U5\|G7J2U5_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK48255.1}

Sequence

Transcript Sequence

>Glyur000101s00010309.1
CTCATTTCTCAAACATTAAAGGCTATTCACTGACCCACCATTCCATTCCATTCTACATCATCTCTCATTTCTTCTTGGAGACTCAACCGCCTCTTCCTTCACATACTTTCTCTCTGTTCCTGTTGGTGTTCCTCTTCAGCTGCAGCTTCAAGGTCTATCTTCCTTTCAAAAGTATAAACAGGTTTTAAGAAAGCTTGTAGAAAAGAGAGGAGAACATCTGTTTTCTGTGGCTCCGATGGCAGGGCTGAATTTTGAGGCTGAATATACTGACAGCCATGATGTTGTGAAGATATTTGCAGCTGAAGGTGTTGAGTTCCTTTTATCTTGTGAAGGGAAGGTACCCTTGTCAGAATGTAATGGGAAAATCATCTGCCTGTTTTTCTCTGCCANCTGGTGTAGGCCTTGCAGACTTTTCATTCCTCATCTGGTTGATCTCTATGAAACACTGAGAAAAAGGGGAACAAATCTAGAGATCATCTTCATCTCCTTTGACCATGATGAGGAGGGATNCAAAGAACACATCAAGAGTATGCCATGGCTAGCCGTCCCATTTGATGCAAANTTGCATAGAAGACTGATTGACAGATATCGGGTTGATCGAATCCCATCCTTCATTCCACTGTGTTCAGATGATGCCTTAACTGTTGGAGAAAACATGATTGAGTGGATTGAGGATTATGGTGCTGATGCATTTCCTTTCACAAGGAAGAGGCATGAGGAATTGGAAGCCTTGGATAAAAGAAAACGTGAAGAAGTAAATTTGGAAGAATTATTGGCACACCAAGGACGCAACTTTCTCATCTCTGGAGATTATAGAAAGGATACAAAAGGCCACTGCTTTGAGACTGTTTTAGTCTCAACAGATAGGGACCTCAAGGAATTCAATGACAACATAGGTAGTATGCCATGGCTTGCTATCCCATATGAGGATAGGACAAGGCATGANCTTTGTAGAATCTTTGACATAAAGGGTATTCCAGCTTTGGTTCTGATTGGACCAGATGGCAAAGTCATTAGTTTGAATGGGAAGTTTATGGTCTCCTCATATGGTGCAGAAGCTTTCCCATTTACTGAGTCAAGGATAAGAGATCTAGAGGCTGCTCTGAGAAAGGAAGGAGAGGCTTTGCCTCAACAGGTTGAGGATGTCAAGCATGAACATGTGCTGAAATTGGATATGGCCAAAGCATATGTATGTGATTCCTGTAAGAAACAAGGGAAGTTCTGGGCATTCTCTTGTGATGTGTGTGACTATGACCTTCACCCAAGTTGTCTAGAGAAGGTTAACAAAGACCAAATCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00101	139296	142490	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0035556 intracellular signal transduction

GO:0055114 oxidation-reduction process

molecular_function
GO:0047134 protein-disulfide reductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000101s00010309.1	PF13905.1	Thioredoxin_8	42	129	2.00E-23
Glyur000101s00010309.1	PF13905.1	Thioredoxin_8	196	259	3.00E-13
Glyur000101s00010309.1	PF07649.7	C1_3	319	345	5.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.715
SRR1783600	control	2.707
SRR1783602	moderate drought stress	8.566
SRR1811619	moderate drought stress	8.203

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.162
DRR006520	Root Summer glycyrrhizin high producing strain	11.747
DRR006521	Root Winter glycyrrhizin high producing strain	10.802
DRR006522	Root Winter glycyrrhizin high producing strain	9.780
DRR006523	Root Summer glycyrrhizin low producing strain	12.442
DRR006524	Root Summer glycyrrhizin low producing strain	12.593
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.470

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.434
SRR2868004	Drought Stress (root)	24.743
SRR2967015	Control (root)	42.395

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.301
SRR9715740	Leaf	79.827
SRR9715741	Leaf	82.086
SRR9715739	Root	4.362
SRR9715742	Root	11.736
SRR9715743	Root	9.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.444
SRR8749028	MeJA induced 9h	2.524
SRR8749029	MeJA induced 9h	1.028
SRR8749030	Uninduced	2.076
SRR8749031	Uninduced	1.406
SRR8749032	Uninduced	0.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.340
SRR8400027	Control - Root	17.305