Gene detail

Gene detail information of Glyur000100s00008398

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41330.1	6.00E-149	BTB/POZ domain with WD40/YVTN repeat-like protein
NR	KEH21081.1	0	BTB/POZ domain plant protein [Medicago truncatula]
Swissprot	tr\|Q9FN67\|Y5133_ARATH	0	BTB/POZ domain-containing protein At5g41330
trEMBL	tr\|A0A072TV73\|A0A072TV73_MEDTR	0	BTB/POZ domain plant protein {ECO:0000313\|EMBL:KEH21081.1}

Sequence

Transcript Sequence

>Glyur000100s00008398.1
ATGCCACCCTTTGAAGGTTCTCATGCGGATGGTTTTCTTCAATCCCAACACAAACCAGACTCCAACATAGTTTCCATCGACGTGGGTGGCCAAATGTTCCAAACCACGAAACAGACACTAACCTCCGCAGGTCCCAAAACCTTCTTCTCCAGAATCGCAGAGGAAGCGTCTCCACTCTACACCCCTTTCGTTGACAGAGACCCCGAAATCTTCTCCATCCTTCTCTCTCTCCTCAGAACCGGTAACCTTCCTTCAAAGGCCAAATCTTTCGACCTTCAAGACCTAATCATAGAGTCCCAATTCTGCGGCATCGAGAACATCCTCATCAATTCCCTCTCCAACCCTTCCCAATTGGAACCCTTCAATTTGCATAAATCGCTTCTCTTGCCCCTCAACGGAAGAGATTCCCCCTCCACCGTCGCCACCACCCCTTACGGTTCCCTCCACGTGGCACACGGTAGCAAGATCACCTCCTTCGACTGGTCCCTCCGAAGGAAATCTACGATCCTCACACACTTCACCGCCGTCGATTCCCTCCTCGCAATCTCACCGTCGGTTGCCGCCGCCGGCGCCAACGACTTTTCCGGCCTCCAGATCCTCGACCTAGAAAGGGGCCACGTCAGGGAAACCCTAAACTGGGAAAACGTGACCAAGTCAGGGTCCACCGTTCAGGCCATCGGAGCCTCGCCGGAGCAAATGTTCGTCAGCTTCGAGTCATGCCGGAGAAACTCCAACTCCATCGTCGTCTACGACCTCCACAGCCTNAGCCCCGTCGCCGAGATCGGCCATAACGAGATCTTCGGCGCCGACATCGATTCCGCGATTCCGGCGACAAAGTTGCAGTGGGTCCCGGGNTACAATCTCTTGTTAGCGTCTGGGTCCCACAGCGGTCCTTCCGGCGTTTCCGGCAACGTGAGGCTTTGGGACGTTCGATCCGGCAACGTTGTTTGGGAGATGTCGGAGAAGGTGGATTGTTTTGCTGACGTGGCAGTCTCCGATGCGCTTTCGGTTATCTTCAAGGTCGGTGTGAATTCCGGCGAGGCCTTCTACGTTGACTTGCGGAACCTGAGTAGTAACGCTGAGANCAACAACTCCTCGTCGTGGGTGTGTTTGGGTGATAAGAGGAAAGTGCTGAATGGGAAAAAGGAAGGGTTTGGTTGCAAGATTGANACGCAGGGGAATCAGGTGTTTTGCACTAAGGGTGGTGACGTGGAGCTTTGGTCAGAGGTTGTTATGGGCTCTGCCAATGCCAAGAACAACAATAGGATCTTCAAGAAGAACTTGATGGGGAGGGTGAGGGACATGGGTGGNGCTAGGATTAACAATTTGGCATTTGGTGGGAGCAGGATGTTCTTGACTAGGAAGGATCAACAATGTGTTGAGGTGTGGCAGAGTTCTTCCAGGGAATTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	351094	352506	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051260 protein homooligomerization

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008398.1	PF02214.17	BTB_2	24	110	6.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.520
SRR1783600	control	4.630
SRR1783602	moderate drought stress	6.401
SRR1811619	moderate drought stress	6.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	94.729
DRR006520	Root Summer glycyrrhizin high producing strain	94.318
DRR006521	Root Winter glycyrrhizin high producing strain	0.079
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	80.178
DRR006524	Root Summer glycyrrhizin low producing strain	81.625
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.046
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.466

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.360
SRR2868004	Drought Stress (root)	174.264
SRR2967015	Control (root)	196.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	503.717
SRR9715740	Leaf	282.715
SRR9715741	Leaf	626.460
SRR9715739	Root	196.654
SRR9715742	Root	369.716
SRR9715743	Root	317.407

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.046
SRR8749028	MeJA induced 9h	85.551
SRR8749029	MeJA induced 9h	70.903
SRR8749030	Uninduced	81.260
SRR8749031	Uninduced	139.417
SRR8749032	Uninduced	103.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.722
SRR8400027	Control - Root	97.611