Gene detail information of Glyur000100s00008397 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52430.1 | 4.00E-35 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_003525388.1 | 0 | PREDICTED: uncharacterized protein LOC100791666 isoform X1 [Glycine max] |
| Swissprot | tr|Q9SRE5|Y1666_ARATH | 1.00E-39 | Uncharacterized protein At1g76660 |
| trEMBL | tr|I1K6H3|I1K6H3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00100 | 344495 | 347812 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.162 |
| SRR1783600 | control | 14.353 |
| SRR1783602 | moderate drought stress | 19.859 |
| SRR1811619 | moderate drought stress | 19.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.280 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 63.270 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.907 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.845 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 124.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 123.738 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.085 |
| SRR2868004 | Drought Stress (root) | 39.872 |
| SRR2967015 | Control (root) | 109.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 167.705 |
| SRR9715740 | Leaf | 151.104 |
| SRR9715741 | Leaf | 186.498 |
| SRR9715739 | Root | 249.046 |
| SRR9715742 | Root | 346.051 |
| SRR9715743 | Root | 317.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 292.344 |
| SRR8749028 | MeJA induced 9h | 293.170 |
| SRR8749029 | MeJA induced 9h | 343.692 |
| SRR8749030 | Uninduced | 78.650 |
| SRR8749031 | Uninduced | 123.909 |
| SRR8749032 | Uninduced | 137.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.550 |
| SRR8400027 | Control - Root | 30.394 |