Gene detail

Gene detail information of Glyur000100s00008396.6

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G63770.3	Peptidase M1 family protein
NR	KHN16808.1	Aminopeptidase N [Glycine soja]
COG	YP_004984429.1	aminopeptidase N [Azospirillum brasilense Sp245]
Swissprot	tr\|Q8H0S9\|PSA_ARATH	Puromycin-sensitive aminopeptidase
trEMBL	tr\|I1K6H2\|I1K6H2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G37670.1}

Sequence

Transcript Sequence

>Glyur000100s00008396.6
GTGGAAATCCATAGGTCCTAATTAGGTTATCGGGATAATGGCACGGTTGGTTCTGCCATCGAAGACTCTGGCTTTCTCGAGGAAGAGTCTACTGGGTTTGATCTCCCCTGCTCCTGTCATTTTGCGAAAAAAGTGTTGCCCGTTTTATTCTACCTTACCTAGGGTCAAGCAAGTAAGTAGGAGGCTAATTTGTTCGGTTGCTACAGAGGATTTATCAAAGCAAGTTGAAGAATCTAAAATGGACATGCCAAGAGAAATATTCTTAAAGGATTACAAAAGGCCCGATTACTATTTTGACACTGTGCATCTGAAATTTTCCTTGGGAGAGGAGAGGACAATTGTTAGTTCTAAAATTGCTGTGTTTCCTCGCATTGAAGGTTCTTCTCCCCCGCTAGTTTTAGATGGACAAGACTTAACTTTAGTTTCAGTTCAGCTTAATGGCAAGGCCTTGAAGGAGGAAGATTATCATTTGGATGCACGCCATCTGACAATCCTATCACCTCCCAGTGGTAAATATGATCTTGAAATTGTTACCGAGATTTTGCCACAGAAAAACACATCATTAGAGGGACTTTATAAATCATCTGGGAATTTCTGTACTCAATGTGAGGCTGAAGGCTTCCGTAAAATTACATTTTATCAGGATCGGCCTGATATAATGGCAAAATATACAGTTCGCATTGAGGCAGATAAGTCACTGTATCCAGTGTTGTTGTCTAATGGAAACCTGGCTGAACAGGGTGACTTGGAGGATGGCAAACATTATGCTGTTTGGGAGGATCCCTTCAAGAAACCTTGTTATTTGTTTGCCTTGGTCGCTGGGCAATTGCAGAGTAGAAATGACACATTTACTACCCGCTCAGGACGAAAGGTGTCCCTTAGGATATGGACACCTGCAGATGACGTACCTAAGACTGCACATGCTATGTATTCTCTGAAAGCAGCTATGAAGTGGGATGAAGATGTTTTCGGACTTGAATATGACCTGGATCTCTTCAATGTTGTTGCTGTCCCAGATTTTAATATGGGAGCCATGGAAAACAAAAGCTTGAATATTTTCAATTCCAGGCTTGTATTGGCTTCTCCAGAAACTGCTACAGATGCAGATTATGCTGCAATATTGGGAGTTATTGGCCATGAGTATTTCCACAATTGGACTGGCAACAGAGTTACGTGTCGTGACTGGTTCCAACTTAGCCTGAAGGAAGGTCTCACTGTTTTTCGTGATCAGGAATTCTCATCTGACATGGGAGGTCGTACTGTAAAGCGGATTGCTGATGTTTCAAAACTTAGAAATTATCAGTTTCCACAGGATGCAGGTCCAATGGCCCATCCAGTGCGACCACACTCTTACATCAAGGGGGCTGAAGTGGTCAGAATGTACAAAACCTTACTGGGAAGTCAAGGGTTCCGAAAAGGCATGGATCTTTATTTTAAGAGACATGATGGACAAGCTGTAACATGTGAAGATTTTTTCGCTGCCATGCGAGATGCAAACGATGCTGATTTTGCAAATTTCTTGCTATGGTACTCTCAAGCAGGGACTCCTGTTGTTAAAGTAAATACTTCTTATAATCCAGAAGCACATACGTTTTCTTTGAAGATTAGTCAAGAAATGCCGCCAACTCCAGGGCAGCCAGTTAAGGAACCCACGTTCATTCCTGTTGCAGTAGGTTTGCTTGACTCGACTGGCAAGGACATTCCTCTTTCGACTATTTATCATGATGGGACTTTGCAATCTGTCTCAAGCAATGATCAATCAGTCTGCAGTACAGTCCTTAGAGTCACTAAGAAAGAAGAAGAGTTTGTGTTCAATGATATATTTGAGAGGCCCGTTCCATCTNTGTTCAGGGGATACAGTGCTCCTGTCCGTCTTGAATCTGATCTCACTGATGATGACCTGTTTTTCCTATTAGCTAATGATTCTGATGAATTTAACCGATGGGAGGCTGGACAAATTTTGGCACGAAAGCTGATGCTCAGCTTGGTGGATGATTTGCAACATTACAAACCATTGGTTCTGAATCCCAATTTTGTTGATGGCTTCAAACGTATACTGTGTGACTCAAGTCTGGACAAAGAGTTTGTGGCAAAGGCAATAACTCTGCCTGGTGAGGGAGAAATAATGGACATGATGAAAGTTGCAGATCCTGATGCTGTTCATACTGTTCGAACTTTCATCAGGAAACAGCTTGCAAGTGAATTGAGATCAGACTTCCTCAGCACAGTAGAAAATAATAGGAGCTCGGGAGAATATGAGTTCAATCATCCAAGCATGGCCAGGCGTGCTTTGAAAAATATTGCTCTTGCTTATCTTGCATGCCTTGAGGGTCAAGAATTCACCAACCTTGCACTTCACGAGTATAAAACTGCTACAAATATGACTGAGCAGTTTGCAGCTTTGGCTGCCATAGCCCAGAACCCTGGTAAAACTCGTGATGACGTTCTTGCTGACTTTTATGGCAAGTGGCAACATGATTTCTTGGTGGTGAATAAATGGTTTGCTCTTCAAGCAATGTCCGACACTCCTGGTAATGTTGAGAATGTGCAGAAACTGTTGACCCACCCAGCATTTGACATGCGCAATCCCAACAAAGTGTACTCTCTTATTGGAGGTTTCTGTGGGTCTCCAGTGAACTTTCATGCAAAGGATGGGTCAGGCTATGAGTTTTTGGGAGAAATTGTGCTGCAACTCGACAAAATAAATCCTCAGGTTGCCTCAAGAATGGTGTCTGCTTTCTCAAGATGGAAGCGTTATGATGAGAACAGACAAAAACTAGCAAAGGCTCAGCTGGAGAAGATCATGTCTGCCAATGGACTATCGGAGAATGTGTTTGAAATCGCTTCGAAAAGCTTAGCTTCTTAAAAGTGTTAATGGCTGGTATGAAAAACTACCTGTCTTTCAAACAGTTCTGATGCGTTTTTGGCGAAAACAATTGTTTCCATGATCCCAATATCTTGTACAAGCTTGCCGCCACGTGTAGCTCTTACACACAGCATGTCTCAACTCGGTGTGGTTTCTTCCACCTGATTTCTCTGTCGATCTTCCATGGATGTAGAATAACATTATGCAATAAAACAAAACAAGTTTCTTTTGACAAAAAAAAAGATTCTCTTGATAACCCTAAATGATTCGATGGATTATAGTTCGTTATACCGTTTTTGTTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	330918	340123	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01256	pepN	EC:3.4.11.2	Glutathione metabolism	map00480
			Glutathione metabolism	map00480
			Glutathione metabolism	map00480
			Glutathione metabolism	map00480
			Glutathione metabolism	map00480
			Glutathione metabolism	map00480

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0008237 metallopeptidase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008396.6	PF01433.15	Peptidase_M1	103	452	3.90E-59
Glyur000100s00008396.6	PF11940.3	DUF3458	516	898	4.90E-138

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	70.787
SRR1783600	control	70.986
SRR1783602	moderate drought stress	70.208
SRR1811619	moderate drought stress	70.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	74.591
DRR006520	Root Summer glycyrrhizin high producing strain	73.710
DRR006521	Root Winter glycyrrhizin high producing strain	54.682
DRR006522	Root Winter glycyrrhizin high producing strain	53.057
DRR006523	Root Summer glycyrrhizin low producing strain	64.242
DRR006524	Root Summer glycyrrhizin low producing strain	63.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.773

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	151.529
SRR2868004	Drought Stress (root)	174.666
SRR2967015	Control (root)	158.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	85.078
SRR9715740	Leaf	112.356
SRR9715741	Leaf	101.551
SRR9715739	Root	30.697
SRR9715742	Root	93.834
SRR9715743	Root	84.449

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	81.862
SRR8749028	MeJA induced 9h	90.227
SRR8749029	MeJA induced 9h	65.643
SRR8749030	Uninduced	53.688
SRR8749031	Uninduced	53.227
SRR8749032	Uninduced	58.180

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	113.209
SRR8400027	Control - Root	108.148