Gene detail information of Glyur000100s00008393.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11400.1 | 1.00E-84 | ARID/BRIGHT DNA-binding domain;ELM2 domain protein |
| NR | XP_003524452.1 | 0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LDD4|ARID2_ARATH | 6.00E-104 | AT-rich interactive domain-containing protein 2 |
| trEMBL | tr|K7KS19|K7KS19_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37635.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00100 | 304414 | 308790 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000100s00008393.1 | PF01388.16 | ARID | 49 | 135 | 3.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.165 |
| SRR1783600 | control | 5.188 |
| SRR1783602 | moderate drought stress | 4.935 |
| SRR1811619 | moderate drought stress | 4.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.604 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.888 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.976 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.379 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.456 |
| SRR2868004 | Drought Stress (root) | 6.137 |
| SRR2967015 | Control (root) | 6.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.928 |
| SRR9715740 | Leaf | 2.783 |
| SRR9715741 | Leaf | 2.164 |
| SRR9715739 | Root | 0.836 |
| SRR9715742 | Root | 4.434 |
| SRR9715743 | Root | 2.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.129 |
| SRR8749028 | MeJA induced 9h | 3.132 |
| SRR8749029 | MeJA induced 9h | 2.520 |
| SRR8749030 | Uninduced | 2.417 |
| SRR8749031 | Uninduced | 3.838 |
| SRR8749032 | Uninduced | 2.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.828 |
| SRR8400027 | Control - Root | 6.653 |