Gene detail

Gene detail information of Glyur000100s00008389.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41380.1	1.00E-47	CCT motif family protein
NR	XP_006580560.1	4.10E-131	PREDICTED: uncharacterized protein LOC102665661 [Glycine max]
Swissprot	tr\|Q9SK53\|COL3_ARATH	3.00E-10	Zinc finger protein CONSTANS-LIKE 3
trEMBL	tr\|K7KS13\|K7KS13_SOYBN	2.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G37600.2}

Sequence

Transcript Sequence

>Glyur000100s00008389.1
ATGTCTTCTGATCTTTACTCTCTTGGCACCAATTTCCACACACATTCAACCTCTGATGGAGTTGGAGATCTTCCCTTTTTCTCCGACCCTTTCCCTTTCTTCAACACTTCTTCATCTCACACTACTGATGTAGCTCAACAGAGTTCAAACCCCTTTGATGAATCTCTTCCTTCTTCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTCAACCTTTACCAAGGTAACAACCACACCACCACAGTGCAGACTCTGTCTTCTAATGGCCCAACAAATTCAGCAGCAAGTGAATTCGGAAGCTTCTCAGCTTTTGNTGGGTCAGAAGTGAAGAGCGAGGAGTCCCAAATGGGTCTTGATTATGCCTACAACAATCAGCAATTCCTTCCTCACAGTTACGGTGGTACTGAAAGTGTGTCTAAGTACATGCAAAGAAGCTTCAGTAGTAACTCTTTCGAAGGAAAACCCGGTTTTTTATTTCAAACTCGCCANGAAACTCTCGTGGATTCCCCAAATTTTCAAAGGAATGATATAAGCTCTCCTGAAAACAGTGCCTTCTCTGGACAAATGAGAAGGGTGTGTAGTACAGGAGATTTGCAGAACATGAAAGCAAATCACATGTCTTCAACGGAGGGGCAGTTGTTGGAGGAACCAAACTTTAAAGTAGGGCGATACAGTGCAGAAGAAAGAAAAGAAAGAATTTCCAAATACAGAGCCAAGAGAACACAGAGGAACTTCAACAAGACCATTAAGTATGCATGCAGAAAGACACTAGCGGACAATCGACCCCGCGTACGTGGCAGGTTCGCACGCAACGATGAGGCCAGCGAGATTCCTAAGGCTCCGTGTTCAACCGGAGATGAAGACGAAGTCGATTTCTGGATTGCGGAATTGCGGTTGCATGAAGAGCGAGACGATGTAACAGTGGGAGGAGCAGAACAATATGTGAAGAGTTACGGAACAAGTCAGTTTCAGTACTGTGGCTTTTGAGAGTTAGTTAGGAAACGGGACAGGCGGCATAATTTAGGCTCGCTCGCTCGCGGCACTTGATCAAGCGGAAGCCTTTTGCAAGCCATATTGCAGATTTTTTTTCTTCCTTTCTTCTTCTTTATTTAATTAATTAGATTAGATTAGATGCTTTTATAAAATAAAATATATCAATAAGTCACCCTTACATGGAATCTGAGATGTTCCTGAGGTCAATGTGGAAGTGGGTTGTTGAAGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	274410	276504	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008389.1	PF06203.9	CCT	239	283	5.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.058
SRR1783600	control	0.057
SRR1783602	moderate drought stress	0.240
SRR1811619	moderate drought stress	0.187

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.468
DRR006520	Root Summer glycyrrhizin high producing strain	3.503
DRR006521	Root Winter glycyrrhizin high producing strain	0.010
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.263
DRR006524	Root Summer glycyrrhizin low producing strain	0.176
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.449
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.220

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.689
SRR2868004	Drought Stress (root)	9.747
SRR2967015	Control (root)	11.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.027
SRR9715740	Leaf	0.050
SRR9715741	Leaf	0.002
SRR9715739	Root	0.527
SRR9715742	Root	2.028
SRR9715743	Root	1.932

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.002
SRR8749028	MeJA induced 9h	0.004
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.002
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.367
SRR8400027	Control - Root	1.318