Gene detail

Gene detail information of Glyur000100s00008382.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41460.1	4.00E-170	Protein of unknown function (DUF604)
NR	XP_004503683.1	0	PREDICTED: uncharacterized protein LOC101490078 [Cicer arietinum]
trEMBL	tr\|Q2PF02\|Q2PF02_TRIPR	0	Putative uncharacterized protein {ECO:0000313\|EMBL:BAE71200.1}

Sequence

Transcript Sequence

>Glyur000100s00008382.2
CGTCGCTCCTCTCGTGAGACCCACGACGACGGAGGCCAGACGGAGCTCCGGCACGTGGTGTTCGGAATCGCGGCGTCGGCGAAGCTCTGGGAGCAGAGGAAGAACTACATCAAGCTATGGTACAGGTCCAACGAGATGCGCGGCGTGGTGTGGCTCGACGACAAGGTGAGGGCGTCGAACGGCGAGGGTCTCCCTCCGGTGAGAATCTCCGGCGACACTTCGAGGTTCTCGTACACGAACCGGCAGGGTCACCGGTCGGCGATAAGGATCTCGAGGATCGTATCGGAGACGCTGAAAAAAAAACTGAAGGACGTGCGGTGGTTCGTGATGGGTGACGACGACACCGTTTTCGTGACGGAGAACCTCGTGAGGATTCTGAGGAAGTACGATCACAACCAGTTCTATTACATTGGGAGCAAAAAAAAGAGCCACTTGCAGAACATATTCTTCTCCTACGGCATGGCCTACGGTGGAGGAGGATTCGCCATTAGCTACCCTTTGGCCAAAGCACTTCACAAAATGCAGGACCGTTGCATTCAGAGGTACCCGGGACTCTACGGCTCCGACGATAGAATGCAGGCCTGTATGGCCGAACTCGGTGTCCCACTCACCAAAGAAACCGGTTTTCACCAGTATGATGTGTATGGGAACCTGTTTGGTCTTCTTGCATCTCATCCTGTGACTCCGTTGGTGTCAAAAAAAAACCTTGATGTGGTTGAGCCAATCTTCCCCAACGCGACTCGGGTAGAAGCCCTCAAAAAAAACACCATACCAATGAAGCTTGACTCAGCAGGGCTCATGCAGCAATCCATCTGCTACGACAGATCAAAGAGGTGGACCGTTTCCGTTTCATGGGGTTTTGCTGTCCAGATATTCCGAAAAAAAATTTCGCCCCGCGAGATGGAAATGCCTTCAAGGACATTCTTGAACTGGTATAGAAAAAAAAATTACACCGCATATGCATTCAACACGCGTCCGGTTAGCCGACATCCATGCCAGAAAAAAAAAGTATTTTACTTCTCAAAGGCAAAACACAATGCTACAATGCAACAGATAGTGACAAAAAAAAAGAGGCACCGTGTCCCTAACCCAGAATGCCGGTGGAAGATGGCTGATCCTTCTTCTCTTGACAAAGTGGAGGTACATAAGAAACCAGATCCGCATCTATGGGATAGAGCTCCAAGGAGAAACTGTTGCAGAATGATGAAGTCAAAGGGGAAAGGAACCATGGTGATAGATGTGGGTATGTGTAAAGATGGTGAGGTAAGCGAAACATAGTTTTGACATGTCAGTACTGATAAAGTATATTAAGGAGGAGGATTTCTTGTGCATCATCTTCTCTTGGAGTTCATTATTAAAAATTTCTTTATTTGTTGGGTGGCTCACTCACTTCCACGATGTGAGATTTTGTAATTCTTCCCTGGGGTTCACTGAAATGAGGTGAGAGTTGGGGAAAGGTCCATGTACAAAGAAATTTGTAGTTTAAACAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	213643	218141	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008382.2	PF04646.7	DUF604	101	354	2.00E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.226
SRR1783600	control	20.726
SRR1783602	moderate drought stress	14.689
SRR1811619	moderate drought stress	14.407

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.893
DRR006520	Root Summer glycyrrhizin high producing strain	13.709
DRR006521	Root Winter glycyrrhizin high producing strain	3.733
DRR006522	Root Winter glycyrrhizin high producing strain	3.029
DRR006523	Root Summer glycyrrhizin low producing strain	10.348
DRR006524	Root Summer glycyrrhizin low producing strain	10.806
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.033

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.187
SRR2868004	Drought Stress (root)	12.106
SRR2967015	Control (root)	13.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.781
SRR9715740	Leaf	1.232
SRR9715741	Leaf	1.895
SRR9715739	Root	28.105
SRR9715742	Root	25.489
SRR9715743	Root	25.489

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.460
SRR8749028	MeJA induced 9h	12.393
SRR8749029	MeJA induced 9h	26.018
SRR8749030	Uninduced	2.773
SRR8749031	Uninduced	1.511
SRR8749032	Uninduced	6.146

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.710
SRR8400027	Control - Root	44.681