Gene detail

Gene detail information of Glyur000100s00008375.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63910.1	5.00E-70	myb domain protein 103
NR	KHN16792.1	1.09E-166	Transcription factor MYB86 [Glycine soja]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	2.00E-60	Transcription factor MYB86
trEMBL	tr\|I1KPE8\|I1KPE8_SOYBN	4.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02080.1}

Sequence

Transcript Sequence

>Glyur000100s00008375.1
GCCAGAGTTAAGTTTGATGGAATGTCATTTTAGGGTTAGATGGAGATCTGGGTCCCTTCCATGGACCCCATGATCAGTTTCTGAATATTGTATATGTTAGGGCTTTGTAGTACTTGCCTCGCTTTTTAAAGGNGGAGAGGAAGAGAGAGGGACTCATTAACTATTCTATTAAGCTCACACAACACAAATATCCATTATTCCACACTTGAACCTGCTGCAGGCATTACACGCCCACTTTGGGGACAACACTACTAAAAGAAAGGCGACAGACATAGCTAGCTAGGAATTAATAAAATGGGTCACCATTCATGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGACNAGAAACTCATCAGATACATTACCACTCATGGCTATGGCTGTTGGAGTGAAGTCCCTGACAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGGTTGAGATGGATTAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAGCTCATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGGACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGTCTTCAGGGTCTTCATCCTCCATTGCACAAAATGCCAATCATTCCCAGTTCAATTATAATTATAATTCTAGTAATAAACTAGATCAGTNCTTTGCCAAGCAAGAGAATAATGTAACAGCAGCAAAGCCACCGGTTCAAGAAACCTTATTTTCTTCCACATGCCCTCTGTTTATGTTTGAGCCTAGTTCACTAGATGGAACAACAACAACAACACCAACGCCAACATACTGTAACAATGTAGTGCGAGCAGAACACTTCCAAGACCAAGATCCTCTGGGTTTGAGCTCTGAAACATGGAACTTGAGCAACCATCAAGTCCAGGCACTACCTCCTCCAATATCAACAATGTCTGTAGGCTTTGACACCGCGAATAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCACTTCATGAAGTAGTACAGTCTTGTAGGNTGGAGGAGGAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGAGTTTCATGAATGGGTAGAGACCCAGCAACAACAATGTCCTAACTTTATTTTCTGGGACAATAATGTTGAAGGACAGCTTGGTGGGGAAGAAATAGCACCTAATTCATCAAATATGGGAACAACAAACNCACTTTCTCCTTTTCCTTCCAATTCATCTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	171458	173615	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008375.1	PF00249.26	Myb_DNA-binding	14	61	9.30E-14
Glyur000100s00008375.1	PF00249.26	Myb_DNA-binding	67	111	2.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.509
SRR1783600	control	1.524
SRR1783602	moderate drought stress	1.585
SRR1811619	moderate drought stress	1.677

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.778
DRR006520	Root Summer glycyrrhizin high producing strain	1.680
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.255
DRR006524	Root Summer glycyrrhizin low producing strain	0.305
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.774
SRR2868004	Drought Stress (root)	3.935
SRR2967015	Control (root)	3.465

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.437
SRR9715740	Leaf	0.752
SRR9715741	Leaf	0.998
SRR9715739	Root	0.607
SRR9715742	Root	2.175
SRR9715743	Root	0.931

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.537
SRR8400027	Control - Root	13.651