Gene detail

Gene detail information of Glyur000100s00008372

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63940.2	0	monodehydroascorbate reductase 6
NR	KEH21129.1	0	monodehydroascorbate reductase [Medicago truncatula]
COG	YP_003327621.1	2.00E-58	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Xylanimonas cellulosilytica DSM 15894]
Swissprot	tr\|P92947\|MDARP_ARATH	0	Monodehydroascorbate reductase, chloroplastic (Precursor)
trEMBL	tr\|A0A072TUC0\|A0A072TUC0_MEDTR	0	Monodehydroascorbate reductase {ECO:0000313\|EMBL:KEH21129.1}

Sequence

Transcript Sequence

>Glyur000100s00008372.1
ATCTAGTATAGGACCAGGGAGTATTTGATTGCTGTGTCATTTTTCCGTAACGGATTTCTGTTCTGTGATTGTGTGCAACAGTTCGCAGACTCACAATGGCAGCGATAACTAACTCCTTGTCACTGAAGCATGGCCTTTCCCTTGGGTGTCCCCAAACAACGTTCCTGACTCCGAGTCGAGCTCGTCCTTCTTCCACTCCCCTCGCATTCAGAACCTTCCGCAGATGTTACGCCTCTTACGCCAATGAGAATCGCGAGTATGTGATTGTTGGCGGCGGAAACTCCGCGGGGTATGCTGCTCGCACTTTCGTGGAGCACGGCATGGCCGATGGTCGCCTTTGTATTGTGACCAAAGAGGCATATGCACCTTACGAGCGTCCCGCTCTGACGAAAGCCTACTTGTTCCCGCCGGATAAGAAACCGGCACGCCTTCCTGGGTTTCACACTTGTGTTGGATCTGGTGGAGAAAGGCAAACTCCGGAGTGGTATAAAGAGCACGGGATAGAGATGTTGTATGAAGATCCAGTAGAAAACATTGATATTGAAAAGCAAACTTTGACAACAANTTCTGGGAAACTTCTTAAATATGGATCACTTATTGTTGCTACAGGATGTACGGCCTCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTGGTGTTCACTATATTCGGGATGTTGCAGATGCTGATGCACTGGTTTCATCATTGGAAAAAGCAAAAAAGGTTGTAGTTGTTGGTGGTGGTTATATAGGAATGGAGGTTGCTGCTGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCAGAAGATCACCTTTTACAAAGACTGTTTACTCCTTCTCTTGCCCGGAGATATGAAGAACTCTACCAAAAGAATGGAGTGAAAATCTTGAAGGGTGCCTCCATAAAAAATTTGGAAGCTGGTTCTAACGGTAATGGCCATGTAGCTGGTGTGAAACTTGGAGATGGATCTATTGTAGAAGCAGATACGGTAATTATCGGCATTGGAGCAAAACCTGCTGTGAGTCCCTTTGAGAGGGTGGGTCTGAATACAGATGTTGGTGGTATACAGGTCGATGGTCAGTTCAGGACAAACATTCCTGGAATATTTGCTGTTGGAGATGTAGCTGCTTTCCCATTAAAGATCTATAATCGTATTGCTCGAGTGGAACATGTAGATCATGCTCGTCGATCAGCACAGCACTGTGTGAAAGCATTACTCAGTGCTCAAACTGACACGTATGATTATCTCCCATACTTCTACTCAAGGGTTTTTGAATATGAAGGAAGCCCTAGAAAAGTATGGTGGCAGTTCTTTGGAGACAATGTTGGAGAAACGGTTGAAGTTGGAAATTTTGATCCTAAAATAGCTACCTTTTGGATTGAATCTGGTAAGCTGAAAGGTGTTCTTCTTGAAAGTGGAAGCCCTGAGGAATTTCAGCTTCTGCCTAAACTTGCCAGAAGTCAGCCTCTGGTTGACAAAGCCAAACTTCAAAACGCAACTTCAGTGGAGGAGGCCCTAGACATTGCTCGGGGATCCTTGCAAGCCGCTGTCTAGTACAGATTTTGGTGACATCGTNCTGTAATTTATCTTTTACGGCTAGATTACCAGTGACTATCTGTCATCAACCGAGTATAATTGCGCCTTAGAGAGAATAATTTTCGTGGTGTTATCATCTTTGTCACGCGGCATTATGAAATGGTTTTCAAGGGGAATATCTAATATGGATTTGATCTAGCGCCATATGGCGTCTATGCAATTCCTTAATAATTTAATGTTACCCTTTGTATTTATATATGTTACATTTATTGTCCATGTGATTTCTGTTCTTGTTGATGGATGTCTCTCATCAAATTATGCTTGTTAGACCAACAGAATCATCTTTCAGGCACTGGAGGAGCAATTTTTATGTTTCAGGACCAGGAGATANAGTGCATGCTGCATGTTCATAGTCATAAGTGTGATAATGTGGACAAGTTTTGCACTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	147396	152042	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08232	E1.6.5.4	EC:1.6.5.4	Ascorbate and aldarate metabolism	map00053

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008372.1	PF07992.9	Pyr_redox_2	56	232	3.50E-19
Glyur000100s00008372.1	PF00070.22	Pyr_redox	210	291	9.10E-16
Glyur000100s00008372.1	PF07992.9	Pyr_redox_2	316	349	1.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	67.907
SRR1783600	control	68.264
SRR1783602	moderate drought stress	49.563
SRR1811619	moderate drought stress	49.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.952
DRR006520	Root Summer glycyrrhizin high producing strain	55.230
DRR006521	Root Winter glycyrrhizin high producing strain	65.353
DRR006522	Root Winter glycyrrhizin high producing strain	63.102
DRR006523	Root Summer glycyrrhizin low producing strain	27.686
DRR006524	Root Summer glycyrrhizin low producing strain	27.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.399
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.163

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.564
SRR2868004	Drought Stress (root)	54.865
SRR2967015	Control (root)	59.878

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.244
SRR9715740	Leaf	17.742
SRR9715741	Leaf	15.050
SRR9715739	Root	78.383
SRR9715742	Root	99.466
SRR9715743	Root	95.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.636
SRR8749028	MeJA induced 9h	61.699
SRR8749029	MeJA induced 9h	32.821
SRR8749030	Uninduced	15.775
SRR8749031	Uninduced	15.035
SRR8749032	Uninduced	12.244

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.953
SRR8400027	Control - Root	60.800