Gene detail

Gene detail information of Glyur000100s00008369.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11280.1	1.00E-180	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
NR	XP_004503673.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Cicer arietinum]
COG	YP_004582080.1	6.00E-70	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|P31531\|1A1C_SOYBN	0	1-aminocyclopropane-1-carboxylate synthase
trEMBL	tr\|A0A072TUM5\|A0A072TUM5_MEDTR	0	1-aminocyclopropane-1-carboxylate synthase {ECO:0000313\|EMBL:KEH21137.1}

Sequence

Transcript Sequence

>Glyur000100s00008369.1
AAACACTGCTCTGTAAATTCTTCATTCTTTATAGCATATAGCAGTTCAAACTTCAAACTTCCGACCGCCAAAAAAGGCTTTGACGCAGCCTTCACTTCTCCCTCGGACTAATTAGATTTCATCAATTTCAATACTTTGCTATCTGCCACACTACATTTCGAAGGATAAACAACAAAAGAAAAAGACTATATTATTATGGGGCTGATGACCGTGGTGGACCAACCTCAATTGTTGTCTAAGATTGCCACTGGCGATGGACACGGTGAAACATCCCCTTACTTCGATGGATGGAAGGCTTATGATGAAGACCCTTTTCACCCTACCCAAAATCCTAATGGGGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTGCTTCTGACTTGGTTCAGAATTGGATAATGAGTAACCCAGAAGCCTCAATTTGCACTCTAGAAGGAGTCCACAATTTCAAGGCCATGGCTAATTTTCAGGATTATCATGGGCTGCCCGAGTTCAGAAATGCTGTGGCTAAATTCATGGGTAGAACGAGAGGAAACAGAGTCAGTTTCGACCCTGACCGTATTGTGATGAGCGGTGGAGCAACCGGAGCACACGAGGTCACTGCCTTCTGTTTGGCAGATCCCGGTGATGCTTTTTTGGTGCCCACTCCCTATTATCCAGGTTTTGATCGGGATTTGAGGTGGAGAACAGGAGTCAAACTTGTTCCAGTCATCTGTGAAAGCTCCAACAATTTCAAATTGACAAGGCAAGCATTGGAATTTGCCTTTGAGGAAGCNAAAGCAGATAACATCAGGGTAAAGGGGTTGCTCATCACCAACCCATCAAACCCACTNGGCACAGTCATGGACAGAGAGACACTGAGAACCGCGGTGAGCTTCATCAANGAGAAGCGAATCCACCTAGTATGTGACGAAATCTATGCTGCCACGGTTTTCAGCGACCCAGGTTTCATAAGCATAGCTGAGATAATAGAGGAAGAAAAAGACATCGAATGTGACAACAACCTCATTCACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGTTTCAGAGTTGGCATCATATACTCTTACAATGATGCAGTGGTCAATTGTGCACGCAAAATGTCAAGCTTTGGGTTGGTGTCAACACAGACACAGTATCTTATGGCAGCAATGCTATCTGATGANGAGTTTGTGGAGAGGTTCCTTGTAGAGAGTGCAAAGAGGTTAGCACAGAGGTACAGAGTTTTCACTGGTGGGTTAACCCGAGTTGGAATAAAGTGCTTGCAGAGTAATGGGGGTCTCTTTGTTTGGATGGATCTGCGTTGTCTTCTTAAAAAACCAACCTTTGAATCAGAAATGGAACTCTGGAGAGTGATCATTCATGAAGTGAAGATCAATGTCTCACCTGGGTCTTCTTTCCATTGCTCTGAGCCAGGGTGGTTTAGAGTGTGTTATGCAAATATGGATGATGGGGCTGTGCGAGTTTCTTTGCAGAGAATTCGCACCTTTGTTCTTCAGAACAATAAGGAGGCCATGGTGTCTGAGAAGAAGCCTTGTTGGCACAGTAACTTGAGGCTAAGCTTCAAGACCAGAAGGCTTGATGATATCATGATGTCACCTCACTCCCCTATGCCTCACTCACCTCTAGTTAAAGCCACTACTTGAATTGATCAATTGGCATATTAATTTCTGAAGAAATTACCGATAGAAAGATTTTTTGGTTCGTTGATTTGTTATTTTGGCAAGGTACATAAGTGCTGGATTTGTTCTTTTCACAACAATAACAGGGAATTATCCTGATATTTTTTTGTATCCTATGTCACAGTCTCTCTAGTGGANATATACCTGGTGTCACAGAACTTGTGCTGCTGGGGTGTATGCATCATGCCCCCTTCAATCTTGNGGGCATTTTTTCTTTTTTCACTTACCCCAAATCATGGGTTTATGGTGAAAGAAGTTTATAGAATTTGTAAGGTGGTTATTGGTTTGGAAGAGTCCAGAAAATATCTGTATTCTGTTACTGAAATTTGTAATAAGGCCAGTGATCAAAGAATAAAAAGCTCAATGAAATTCTTAGAAAGCCTCTTGAAAAGTATCCTATCCCTAGATCCAGTCCATGCATATCATGGTGATTAAATCAAGAAACAGCATTTGACCAGAAAAAAATATATCAAGAAACAGCATTTGACCAAAAAAAATAATCAAGAAAAAGCATGGCAGGTAGATAAATCGTATATCAGTTTTTTAATTGAAAGCATAATCATCAAATCAATTTATGAGAATCCACTTAAACAAAAGCATTAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	131640	135383	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20772	ACS1_2_6	EC:4.4.1.14	Cysteine and methionine metabolism	map00270
			MAPK signaling pathway - plant	map04016

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008369.1	PF00155.16	Aminotran_1_2	50	432	8.60E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.159
SRR1783600	control	0.159
SRR1783602	moderate drought stress	0.149
SRR1811619	moderate drought stress	0.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.186
DRR006520	Root Summer glycyrrhizin high producing strain	35.180
DRR006521	Root Winter glycyrrhizin high producing strain	0.145
DRR006522	Root Winter glycyrrhizin high producing strain	0.142
DRR006523	Root Summer glycyrrhizin low producing strain	62.050
DRR006524	Root Summer glycyrrhizin low producing strain	61.902
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.248
SRR2868004	Drought Stress (root)	24.346
SRR2967015	Control (root)	20.851

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.560
SRR9715740	Leaf	28.445
SRR9715741	Leaf	72.977
SRR9715739	Root	33.557
SRR9715742	Root	91.364
SRR9715743	Root	76.547

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.484
SRR8749028	MeJA induced 9h	7.028
SRR8749029	MeJA induced 9h	4.401
SRR8749030	Uninduced	75.070
SRR8749031	Uninduced	37.494
SRR8749032	Uninduced	13.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.424
SRR8400027	Control - Root	22.877