Gene detail

Gene detail information of Glyur000100s00008367

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63980.2	4.00E-64	D111/G-patch domain-containing protein
NR	XP_004503672.1	0	PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1-like isoform X2 [Cicer arietinum]
trEMBL	tr\|I1KPF4\|I1KPF4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02140.1}

Sequence

Transcript Sequence

>Glyur000100s00008367.1
GCCTGCGTTTTAAATCACAATCGAAGAGAAACGGCGGTGGCTGCGCACAATAACAAGAGAAAGGAAAAAGCAGCAGCGGCAGTGCAGTTGGCGGAGCCATGGCGGCGCCTGAAACCCCTCTTTGTTACGTCGGTGTCGCCAGGCAATCCGCTGCTTTTCGTCTCATGAAGCAAATGGGATGGGAAGAAGGAGAAGGCCTTGGCAAAGAGAAGCAGGGGATCAAGGGACATGTTCGAGTCCGTAACAAGCAGGACACTATTGGTATTGGCTTAGAGAAGCCAAACAACTGGGCATTCGACACCACGCAATTTGATAATATCCTCAAGAGATTGAAAGTTCAAGCGCCGGAATCCAATGACATAGAGAGTAACACGGCTAAGGTAGAAACTGAGGCTGCTGTTCCTGTTGATCATCAGGATTCTGTATCCAAAGCTACTAGACCACAAGGAAGATACAAGAGAAGAGAGAGAGGAAAGCTCGTCTCTGAATATTCCTTAAAGGATCTTGAAGGCATTCTTGTTAAAAAAGGTGACATATCTGGGAACACTGACAATTCTGATGATGAACTGGATTTGTCAAAGACATCTGAAACTCAAAATTTTCAAGATGAAGGAAGCAAATATCCCGATATCCATCCAGAGTGGTGGGGCTATAAGTACGGGTTTGTGTCTGGTGGATTTCTGGGAGCAGAATTGAAGAAGAAAAAGTCCTCAATATCTGGAAGTGCTAAAAATGGGATGGAGAGAACTGCATTTTATGAAGAAGATCAAGAAAACCTCTACAAGCTAGTCCAAGATAAATCCACAACGGGAAAGCAAGGACTAGGCATCAAGGACAGGACCAAGAAAGTAGCTGGATGCTATTTTCAGGGTAAAAAGACATCGTTTGATCATAGTGATGATGAAGATTCAGCTGACAGAGATTCTCTGGAAAAAGAAACACATGATGAAGTGGAAAAGGTTGTTGAATCTAAAGTGAAGCTGAAGAAATTGTGTAAACAGATTTTACACCAGGTGCCTGGAGAATCATTGAAACTGAAACAANTCAAAGTTCTTATTGAAGAACATTCATCTTCAATCTTTTCTGGCTTTTCTTCAAAAAGAGAGGCTGTTNCTTACTTGAAGCGAAAGCTGACAGGTAGTCGGAAGTTTTGTATTGAAGGGAAAAGAGTGCGATTGGCATCCAAGAGAGGTTGAAATTTTGATACATCATTTTGTTGCNGCTTTGCTTATTCATTATATTTTGGGGGAGAAAACCGGGGGGAGAGGGGGGTTGGGATTTGAGATACCTGTGCGAAGTGCAGATTGCATAGGTTCGAGTTAGTGTGGGTAAATTCATTGCTTATAGCTTTCTCAACGAATGTTGTAGTAATTTGTTGAAAGTTATAATAGCATTTTATGAAATTTGGTTTATATTTTTTGTTGNAAGTTAAAATTCTGCTAAGTGCGGGTGTCCACTGGATTGGTATTGAAATTATCTCTGTACTCATTGGAATAATGGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	115246	118217	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008367.1	PF01585.18	G-patch	17	58	3.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.102
SRR1783600	control	41.299
SRR1783602	moderate drought stress	39.240
SRR1811619	moderate drought stress	38.893

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.768
DRR006520	Root Summer glycyrrhizin high producing strain	42.326
DRR006521	Root Winter glycyrrhizin high producing strain	31.214
DRR006522	Root Winter glycyrrhizin high producing strain	30.674
DRR006523	Root Summer glycyrrhizin low producing strain	61.462
DRR006524	Root Summer glycyrrhizin low producing strain	61.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	64.819
SRR2868004	Drought Stress (root)	53.361
SRR2967015	Control (root)	52.735

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.523
SRR9715740	Leaf	33.942
SRR9715741	Leaf	28.126
SRR9715739	Root	2.234
SRR9715742	Root	14.944
SRR9715743	Root	12.503

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	97.112
SRR8749028	MeJA induced 9h	71.379
SRR8749029	MeJA induced 9h	77.228
SRR8749030	Uninduced	53.722
SRR8749031	Uninduced	59.861
SRR8749032	Uninduced	41.240

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.705
SRR8400027	Control - Root	55.447