Gene detail information of Glyur000100s00008362 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41590.1 | 4.00E-46 | Protein of unknown function (DUF567) |
| NR | KEH21151.1 | 6.82E-120 | tubby C 2 protein [Medicago truncatula] |
| Swissprot | tr|A0MFL4|LOR17_ARATH | 6.00E-57 | Protein LURP-one-related 17 |
| trEMBL | tr|A0A072TVE4|A0A072TVE4_MEDTR | 3.00E-120 | Tubby C 2 protein {ECO:0000313|EMBL:KEH21151.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00100 | 78957 | 82465 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000100s00008362.1 | PF04525.7 | Tub_2 | 57 | 243 | 6.50E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.594 |
| SRR1783600 | control | 6.470 |
| SRR1783602 | moderate drought stress | 7.351 |
| SRR1811619 | moderate drought stress | 7.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.144 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.467 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.378 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.450 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.527 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.321 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.802 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.074 |
| SRR2868004 | Drought Stress (root) | 10.710 |
| SRR2967015 | Control (root) | 9.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.981 |
| SRR9715740 | Leaf | 12.463 |
| SRR9715741 | Leaf | 15.541 |
| SRR9715739 | Root | 1.682 |
| SRR9715742 | Root | 9.919 |
| SRR9715743 | Root | 8.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.430 |
| SRR8749028 | MeJA induced 9h | 16.596 |
| SRR8749029 | MeJA induced 9h | 15.627 |
| SRR8749030 | Uninduced | 12.757 |
| SRR8749031 | Uninduced | 9.750 |
| SRR8749032 | Uninduced | 10.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.278 |
| SRR8400027 | Control - Root | 7.473 |