Gene detail information of Glyur000100s00008359 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46150.1 | 9.00E-31 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_004503662.1 | 2.84E-100 | PREDICTED: uncharacterized protein LOC101511140 [Cicer arietinum] |
| trEMBL | tr|C6T559|C6T559_SOYBN | 7.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G02220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00100 | 47738 | 48433 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000100s00008359.1 | PF03168.8 | LEA_2 | 110 | 209 | 5.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.460 |
| SRR1783600 | control | 0.370 |
| SRR1783602 | moderate drought stress | 0.584 |
| SRR1811619 | moderate drought stress | 0.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.089 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.775 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.264 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.288 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.688 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.347 |
| SRR2868004 | Drought Stress (root) | 50.385 |
| SRR2967015 | Control (root) | 39.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.728 |
| SRR9715740 | Leaf | 30.172 |
| SRR9715741 | Leaf | 50.186 |
| SRR9715739 | Root | 5.628 |
| SRR9715742 | Root | 12.285 |
| SRR9715743 | Root | 12.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.590 |
| SRR8749028 | MeJA induced 9h | 78.176 |
| SRR8749029 | MeJA induced 9h | 48.567 |
| SRR8749030 | Uninduced | 52.118 |
| SRR8749031 | Uninduced | 24.043 |
| SRR8749032 | Uninduced | 6.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.694 |
| SRR8400027 | Control - Root | 8.621 |