Gene detail

Gene detail information of Glyur000100s00008354

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64110.3	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	KHN16776.1	0	Putative AAA domain-containing protein C24B10.10c [Glycine soja]
COG	YP_003816389.1	5.00E-57	AAA family ATPase [Acidilobus saccharovorans 345-15]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	2.00E-60	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|K7L4G7\|K7L4G7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02261.1}

Sequence

Transcript Sequence

>Glyur000100s00008354.1
ATGGAACAGAAAAGCATTCTGATATCGGCGCTGAGCGTTGGGGTGGGAGTGGGAGTNGGTATTGGATTGGCTTCTGGCCAAACCGTTGGTAAATGGGGAGCTAATGCCTTCTCATCAAACGCCGTTACTGCTGAGAAGATGGAGCAGGAAATGCTTCGACAAGTTGTTGACGGCAGAGAAAGCACCACACGGGTTTTGCTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCTAAATATACACGTAATCTTGCTCCTGCAAGCCGGACTATTCTGCTCTCAGGGCCCGCTGAACTTTACCAACAGATGCTTGCCAAGGCTTTGGCTCATTACTTTGAGGCGAAGTTGCTTCTGCTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTGGCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCNACTTTGGAGCGGCTATCTGACCTATTTGGGTCATTTTCAATCTTTNCACAAAGGGAGGAACCTAAAGGCAAAATGCACAGGCAAAACAGTGGAGTGGACCTACAATCAATGGGGGCTGAAGCATGTTGTAATCCTCCAAAGCTCCGTAGGAATGCTTCTTCCTCTTCAAATATTAGCAACCTTGCTTTGCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAAGCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAATCCCTTTACAAGGTTCTGGTTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGAGGGATGTTGATAGGTTGTTGCATAGATCACAAAGGATATATAACTTGTTCCAGCAAATGTTGAAGAAACTGTCTGGACCGATTCTGATTCTTGGTTCAAAAGTTCTAGATTCGGGTAATGACTANGAGGAGGTGGATGAGAGACTTAATTTTCTCTTTCCATACAACATCGAAATCAGGCCCCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTAGGGATAACAAGAATCATATCATGGAAGTGCTCGCAGCCAATGATCTTGATTGCGATGACCTGGACTCCATCTGTGTGGCAGACACAATGGTTCTCAGTAACTACATAGAAGAGATTATTGTGTCAGCAATTTCTCATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTCTTGCAATAGTTTGTCGCATGCATTGGGTATATTCCAAAAGGGGAAATTCAGTGGAAGAGATACATCAAAATCGGAAGATCAAGCTCTAAAATCTGAGATCCAAAGTGCAGGAGAAACTGTTATGAAACCAGCAGCAAAGGCTGAAGATGCTGCTCCTGAGAAAAAGNCTGAAGCAGAAAAACCAACTTCGGTGGGAAAGGCAGACGGTGAAAAATCAGTTCCAGCATCCAAAGCGGCTGAAGTTCCTCCTGATAATGAATTTGANAAGCGAATAAGGCCTGAGGTTATACNAGCTAATGAGATTGATGTCACATTCTCTGATATTGGTGCCTTAGAAGAGACCAAAGAATCCCTTCANGAACTAGTAATGCTTCCACTTCGAAGACCAGACCTTTTCACTGGAGGCCTTCTAAAGCCATGTAGAGGAATATTGCTATTTGGTCCTCCCGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCTAAGGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAANGTTCGCGCTTTATTCACACTCGCAGCCAAGGTCTCCCCAACTATTATATTTGTGGATGAGGTCGATAGCATGCTTGGGCAGCGTACCAGAGTTGGGGAGCATGAAGCAATGCGGAAAATAAAGAATGAGTTTATGTCCCATTGGGACGGGCTTATGACAAAACAAGGGGAGCGCATCCTAGTTCTCGCTGCAACCAATCGGCCGTTTGACCTGGATGAAGCTATTATAAGGCGATTCGAAAGGAGAATTATGGTAGGACTACCATCTGTTGAGAACAGGGAAAAGATTTTAAGGACTCTTTTGGCAAAGGAAAAGGTGGACAAGGAACTTGATTTTAAGGAACTCGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCTGCTTACCGGCCTGTTAGAGAGTTGATTCAGCAAGAGAGGTTAAAGAATCTGGAGAAAAAGCAGAAAGCTGCCAAAGGACAAAATAAGGATGTCGAAGACAGACAAGAAGAACAATCTGTGGGAGGAAATACCCAAGAAGTAGAAGAGAAAGTTCAACAGGAGAGAGTTATTACCCTTAGGCCATTGAATATGCAGGATTTCAGAGAGGCCAAGAACCAGGTTGCTGCAAGCTTTGCAGCTGAGGGGGCAGGAATGAGTGAGTTGAAGCAGTGGAACGATCTGTACGGAGAAGGCGGTTCAAGGAAGCAAAAGCAGTTGTCTTACTTCCTATGAAAAACACTGAGGAAGAGAAAGAAAGAAAGAAAACATGGAGATGCCACTAGTGTGGGAAACATTTTCCACTGAAGAGAGACCCAACAGGAAATTAAGAATTTGTTGGTGATTTCTGTGAGATAATNTATCTTGCTGCTTCATCCCCTTCGGCTTAGGAAGTTATGAACCAAGCTATACCTTGGTATTTTGCCCACATGACACGAATATAATTAGTTACAAATGTAATTTATGTTATCTATAAATGGTGTTTTTACAGTGTGCTGTCAATCACTAAAAGCAGAAAGTGGCGTTGTTTATTGGCATTATGTATGGTCTTTTATTACATATGTAACATACTCCTATAATAGAAAAGATGCTGTAATCCAACGTCTCAAGGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00100	20722	26972	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000100s00008354.1	PF00004.24	AAA	549	679	7.80E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.349
SRR1783600	control	3.331
SRR1783602	moderate drought stress	2.017
SRR1811619	moderate drought stress	1.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.324
DRR006520	Root Summer glycyrrhizin high producing strain	7.194
DRR006521	Root Winter glycyrrhizin high producing strain	11.237
DRR006522	Root Winter glycyrrhizin high producing strain	10.863
DRR006523	Root Summer glycyrrhizin low producing strain	2.315
DRR006524	Root Summer glycyrrhizin low producing strain	2.368
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.889
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.460
SRR2868004	Drought Stress (root)	4.010
SRR2967015	Control (root)	3.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.746
SRR9715740	Leaf	1.528
SRR9715741	Leaf	0.699
SRR9715739	Root	0.146
SRR9715742	Root	0.852
SRR9715743	Root	1.194

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.452
SRR8749028	MeJA induced 9h	0.737
SRR8749029	MeJA induced 9h	0.429
SRR8749030	Uninduced	0.176
SRR8749031	Uninduced	0.373
SRR8749032	Uninduced	0.358

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.918
SRR8400027	Control - Root	3.104