Gene detail

Gene detail information of Glyur000099s00014965

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22430.1	5.00E-58	homeobox protein 6
NR	XP_003552015.1	2.38E-131	PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Glycine max]
Swissprot	tr\|P46668\|ATHB6_ARATH	2.00E-73	Homeobox-leucine zipper protein ATHB-6
trEMBL	tr\|I1MYP2\|I1MYP2_SOYBN	9.00E-132	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G01830.1}

Sequence

Transcript Sequence

>Glyur000099s00014965.1
CACAGATGTAAAATGGAGAGATAAAACGAGCACCATGATAACCAATCAAATTCGTTCGGATCCTTTTCGTGTTAAAATCGTTCACACACTTTAGTATTTCCCAAAATTAAAATATGTTATTAGGCTCTAACCCGAAGAAATATCACCGTTACTAAACGGTCGAAAAAACGGGAAGCTCAACCGGCCACAACCGGCAAGTCCAAAGTCACATTTGGGTTGAATTTGGGTTCATTTCAATTTCAATTCATTCATAGCTAACTGCAGTAGCAGTCCACCTAACCCCAGTCAAATTCTAACCCCGGTTGGGTTTATATAAACACTAGAGTGTAAATGAGAACGCCGCTGGGTTCTGAAACTGGTTCAATCGTTTCATCCTCCATCCTTTCACTCTTNTGCTCTCTCTCAGTTTCCATGGTTGGCCGTGTAGATTTAAACACACTCTTAGACTATGTTATTACTTGTATGTCATAATTTGACCGTGTAAAAATCGCAACTTTAGTTGTGTCGTTTGGGATGTGTGTTTTCTTTTTATTGCTTTGAGCTACTATTGACGTTAATTTAGTTTTGTTTGTGTGGTGGGTTTGTCCTGCGTTGTAAGAATTGTTTGATGGGTGAAGAGGGAGAAGAAGTGGTGAGAAAGAAGGAACATGAGGGTNTTAATGGAGATAAGTTTTATTTGAACAGCTACAACTTGCAGTACTGTAAAAGTTGGTGCTGTTTAAGACATGAGAATTCCTTTTCAATGGCTCCTTTTAAGTGAAAACAAAAAACAAAAATCCTTGCCGTCTCAGCCTTTTTCTGAGAGATCTTTAAGACATTGACTAACAAATAAACGGATCCAAAATTCAAAAGACCACTTACTAGTTCATCTATTAAGATCCCATCAATTTACTCATGAAGAGACTCTGCAACTCAGATTCCTCTGGTTCTCTCATGACAATTTGTCCATCAACAGAGGAACACAACAACCGTGTGTATGGTGGTAGGGAGTTCCAATCGATGATGCTGGAAGGACTCGATGAGGAAGGGTGCGTTGAAGAACCTGGGTATCACTCTGAGAAGAAACGTAGACTANGTGTGGATCAAGTCAAGGCTTTGGAGAAGAGCTTCGAGGTGGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTGGCACAAGAACTCGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCAAGATGGAAAACCAAGCAATTGGAGAGAGATTATGGTGTTCTCAAAGCCAATTATGAAGCTCTCAAGGTTAACTTTGATGCCCTCAATCAGAACAACGAGGAGTTGCACAAGCAGATTAAGGAATTGAAAACAAGGCTGCAAGTAGAAAACACCGCNTGCGGCGGTGTTTCGGTGAAGAAAGAGATAATGGAGCCTGAATCTGAAGAAGACAAGCGTGACCCATCTCCCGAAACCTCAATTCCCGGTTCTTCAGAGTCGAAGGATCACTTGAACTATAACTGCATCAACAACAACAACAATGATGTCGGAGCCGCTGCTTCACTCTTATTCACGGTAGACTTCAAAGACGGTTCTTCCGACAGCGACACAAGCGCGGTCTTGAACGAAGACAATTACAACAGCCCCAAAGCCGCCGCCGCCGCCGCCGCAATTTCTTCATCTGGGGTTCTTCAAAGTCAGCACTTTCTGCTGTCTGCTGAAGAATCTTCTCCCATGAATTGCTGCTTCCAGTATCAGAAACAACCGTATCATGCACAGTATGTGAAGATGGAGGAGCACAATTTCGTTAGTGCGGACGAGGCCTGCAATTTCTTCTCTGATGAACAAGCACCGAGCCTCCACTGGTACTGTTCTGACCAATGGAGTTAAAAAGAAAACAAAAATTGGGAAGAAAGAAGATGGAATCGCCTCCACTGGAGGTATTGGAGAGAACTCAAGATCTCTGTAAAAAAAGTGGGTTGGTTCTCTTCGGGGTTCTTCATTTTGGACGCAAAATGTAGAAAAGCAGTGTGGTCAATCAAATTGCTAATAGTTGCGGGAGAACAGAGAAGGGGTTGAGACAGGGGCAGACTGAATCTCGGAACTGATTGGATGGTGATTAAGGTTAATTATGATTCTGGGATCGGGTAATAAGTATTATGAATAATTAATAATTATTAGGTCGTAATGAAAACCCATGCTGTAAAAACATTATGAATTCAAGCATAGAAAACTGCTGTTGGATAGATAATAATTGCTCTATAATTTAGAATTTTGCTCTATATATAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00099	320570	323544	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000099s00014965.1	PF00046.24	Homeobox	56	109	3.70E-16
Glyur000099s00014965.1	PF02183.13	HALZ	111	154	8.80E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	178.245
SRR1783600	control	177.814
SRR1783602	moderate drought stress	192.547
SRR1811619	moderate drought stress	191.547

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	170.910
DRR006520	Root Summer glycyrrhizin high producing strain	169.033
DRR006521	Root Winter glycyrrhizin high producing strain	58.229
DRR006522	Root Winter glycyrrhizin high producing strain	56.672
DRR006523	Root Summer glycyrrhizin low producing strain	166.329
DRR006524	Root Summer glycyrrhizin low producing strain	166.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.871

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	188.245
SRR2868004	Drought Stress (root)	179.731
SRR2967015	Control (root)	216.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.748
SRR9715740	Leaf	32.082
SRR9715741	Leaf	32.575
SRR9715739	Root	27.898
SRR9715742	Root	61.565
SRR9715743	Root	59.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.073
SRR8749028	MeJA induced 9h	38.316
SRR8749029	MeJA induced 9h	25.661
SRR8749030	Uninduced	20.814
SRR8749031	Uninduced	1.712
SRR8749032	Uninduced	4.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	207.191
SRR8400027	Control - Root	209.857