Gene detail information of Glyur000099s00014958 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65270.1 | 5.00E-36 | RAB GTPase homolog A4A |
| NR | XP_010267206.1 | 1.44E-46 | PREDICTED: ras-related protein Rab11A [Nelumbo nucifera] |
| COG | YP_007670739.1 | 4.00E-10 | Ras family protein [Polaribacter sp. MED152] |
| Swissprot | tr|Q40191|RB11A_LOTJA | 1.00E-45 | Ras-related protein Rab11A (Precursor) |
| trEMBL | tr|G7J3P7|G7J3P7_MEDTR | 3.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:AFK47317.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00099 | 241567 | 242466 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000099s00014958.1 | PF00071.17 | Ras | 18 | 82 | 1.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.435 |
| SRR1783600 | control | 40.595 |
| SRR1783602 | moderate drought stress | 23.639 |
| SRR1811619 | moderate drought stress | 24.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.898 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.068 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.224 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.615 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.817 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.553 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 72.063 |
| SRR2868004 | Drought Stress (root) | 53.582 |
| SRR2967015 | Control (root) | 55.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.597 |
| SRR9715740 | Leaf | 20.726 |
| SRR9715741 | Leaf | 30.699 |
| SRR9715739 | Root | 14.410 |
| SRR9715742 | Root | 26.949 |
| SRR9715743 | Root | 20.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.165 |
| SRR8749028 | MeJA induced 9h | 67.229 |
| SRR8749029 | MeJA induced 9h | 60.389 |
| SRR8749030 | Uninduced | 81.627 |
| SRR8749031 | Uninduced | 12.370 |
| SRR8749032 | Uninduced | 18.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.788 |
| SRR8400027 | Control - Root | 65.545 |