Gene detail information of Glyur000099s00014931 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46710.1 | 5.00E-123 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| NR | AET01968.2 | 0 | Rac GTPase activating protein [Medicago truncatula] |
| Swissprot | tr|Q8GYY5|RGAP3_ARATH | 4.00E-162 | Rho GTPase-activating protein 3 |
| trEMBL | tr|G7L9Z1|G7L9Z1_MEDTR | 0 | Rac GTPase activating protein {ECO:0000313|EMBL:AET01968.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00099 | 89154 | 92800 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000099s00014931.1 | PF00786.23 | PBD | 123 | 157 | 8.00E-10 |
| Glyur000099s00014931.1 | PF00620.22 | RhoGAP | 186 | 321 | 1.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.846 |
| SRR1783600 | control | 6.756 |
| SRR1783602 | moderate drought stress | 6.428 |
| SRR1811619 | moderate drought stress | 6.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.572 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.059 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.058 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.068 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.043 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.534 |
| SRR2868004 | Drought Stress (root) | 2.333 |
| SRR2967015 | Control (root) | 2.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.231 |
| SRR9715740 | Leaf | 0.700 |
| SRR9715741 | Leaf | 1.015 |
| SRR9715739 | Root | 3.502 |
| SRR9715742 | Root | 4.279 |
| SRR9715743 | Root | 3.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.265 |
| SRR8749028 | MeJA induced 9h | 0.178 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.034 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.580 |
| SRR8400027 | Control - Root | 12.532 |