Gene detail

Gene detail information of Glyur000099s00014929

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01180.1	2.00E-101	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_007135302.1	1.77E-154	hypothetical protein PHAVU_010G118000g [Phaseolus vulgaris]
COG	YP_001533286.1	1.00E-24	putative methyltransferase [Dinoroseobacter shibae DFL 12 = DSM 16493]
trEMBL	tr\|V7ASV2\|V7ASV2_PHAVU	7.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW07296.1}

Sequence

Transcript Sequence

>Glyur000099s00014929.1
ATGAAAACAGAGCACCACCACAACAAGAGACTTTCCTCCTCTTCACTATCAGCTAGTACCATCATTAGAACAGCAAAACCCGCGGCGTATTTTATCCTCCTCTTGCTAACTTACACCTTGGGTTACTTGTCCCACCCTTCTTCCCCCTCACCACCACCACAATTCCCGCCACCGCCGTCGCCACCTGATTCTTCCGCCACTCTCCGCCTCTCCCCCATTAACACCGCCGAGCTCGACCCGTTCAGAGTCACGACTCGGTGCGCCAATCCAATCCCACCGGAAAACATTCGCCGGACGCTCATCGACCGCCTCTTCAACGGGACCTCGCCGTTCCTCGACTTCCCGCCGGAGCACGCCGCGGGGAAGCTCCGGCGAAGCACGAAGGTCAAGGGTTGGGGCTCAAACGGCGCCGTTTTCGAGAACCTTATTCGCAGGGTGAAGCCGCGAACCATCGTGGAGGTGGGGACGTTCCTCGGCGCCTCAGCGCTTCACATGGCTGAGTTGACTCGCCGGCTCGGGCTCGAAACACAGATCCTGTGCATCGACGACTTTCGCGGCTGGGCCGGGTTCAGGGACCGGTTCAAGAACATAGCGATGGTAAACGGCGACGTTTTGCTCTATTACCAGTTCCTCCAGAATGTGGTCACTTTCAACCAAACCGAATCGGTTTTGCCCGTACCGTTTTCGAGCGGGTCGGCCCTAATGCAGTTATGTGAGTGGGGTGTGTGGGCCGATCTGGTAGCGATAGATGCGGGCCATGACTTCTTCTCGGCCTGGTCCGACATAAACCGGGGCTACCGGATCCTCCGACCCGGTGGGGTCATTTTCGGGCACGACTATTTCACTGCCGCAGACAATAGAGGGGTTAGAAGAGCGGTTGANTTATTTGCCCGAATTCACCGTCTCAAGCTCCAAACAGTTGATTCAAAGAAAGTATCCGATTTTACTGATAATGATCATGAGCACTATCCAACTCCTTCAACCCCACAGTTGAAACAAAGGGCAAGATTACTGGATGATGGATTGATGGTGATTGCCAAGATCAGACAATTGCTTAACAGAAAAAGAAAGTGGGGAGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00099	65545	67837	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000099s00014929.1	PF13578.1	Methyltransf_24	152	280	5.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.796
SRR1783600	control	1.811
SRR1783602	moderate drought stress	1.359
SRR1811619	moderate drought stress	1.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.926
DRR006520	Root Summer glycyrrhizin high producing strain	1.270
DRR006521	Root Winter glycyrrhizin high producing strain	0.305
DRR006522	Root Winter glycyrrhizin high producing strain	0.301
DRR006523	Root Summer glycyrrhizin low producing strain	1.078
DRR006524	Root Summer glycyrrhizin low producing strain	0.920
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.315
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.282

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.951
SRR2868004	Drought Stress (root)	6.338
SRR2967015	Control (root)	4.725

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.707
SRR9715740	Leaf	12.087
SRR9715741	Leaf	9.674
SRR9715739	Root	1.927
SRR9715742	Root	1.600
SRR9715743	Root	1.649

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.133
SRR8749028	MeJA induced 9h	0.609
SRR8749029	MeJA induced 9h	0.367
SRR8749030	Uninduced	0.708
SRR8749031	Uninduced	0.019
SRR8749032	Uninduced	0.358

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.169
SRR8400027	Control - Root	1.978