Gene detail

Gene detail information of Glyur000099s00014925

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46760.1	0	D-arabinono-1,4-lactone oxidase family protein
NR	XP_003548406.2	0	PREDICTED: L-gulonolactone oxidase-like [Glycine max]
COG	YP_435799.1	5.00E-38	FAD/FMN-containing dehydrogenase [Hahella chejuensis KCTC 2396]
Swissprot	tr\|O47881\|GLDH_BRAOL	3.00E-10	L-galactono-1,4-lactone dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|I1MKE1\|I1MKE1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G02280.1}

Sequence

Transcript Sequence

>Glyur000099s00014925.1
CCTCTCTGTTATATCAGACCACAGAAATGTAGTATTNAACACCAAGGGATACTCAATTAAAGCTCTGTCCTAGTTTCCTTGCTCTCNACTCCTTAATAAGCAAAACAGCTACATATATATACATGATACACAAAACTGTATGGTCTAAAAGGTCATAGGAACATTGAAGTTCAAAACTTTCCAATACCATGTTGTTGTTCTGCTTGAAGGGTATGTCANACAAAGCCTTCAGAACAACTCTTGTCCTTCTTTTCTTCTCTGTGGTGGTGGTGCTATCTACTCCTCCAGAGGATCCAATCAAGTGCTCCTCAAAGAACACAAGCTGCACCATCACAAACTCCTATGGCATGTTCCCTGATAGAAGCACATGTCAAGCTGCTGAAGTTCTGTACCCAACAACTGAGCAAGAGCTTGTNTCAATGGTTGCATCAGCAAGTAGGAAAAAAAGCAGGGTGAAAGTTNCCACCCGTTATTCCCACAGCATCCCTAAGCTGGTGTGTCCTGANGGAACAAATGGGTTGCTGATAAGCACCAAATATCTCAACAAGATAGTGAAGATTGATGTGGAAGCAAGGACAATGAGGGTGGAGAGTGGTGTGACAATGAAGCAACTCATCAATGAGGCTGCAAAGGCTGGTTTGGCCTTGCCATATGCACCATATTGGTGGGGCTTGACAATAGGTGGCCTTATGGGAACAGGTGCTCATGGAAGCTCATTGTGGGGGAAAGGAAGTTCAGTTCATGATCATGTGGTGGAGATTAGAATTGTTAGGCCTGCTGGTCCTGAAGATGGGTATGCTAAGGTTGAGAGCCTCAATGAACAACAACAACAGGAAGATCTCAATGCAGCNAAAGTATCACTTGGTGTGCTGGGAGTTATTTCACAGGTCACTCTAAAGCTAGAACCCCTCTTCAAGCGATCCATCACCTATTTGACAAAAGATGATTCGGATTTGGGAGACCAAGCGGTTGCTTTNGGACATGAACACGAGTTTGCGGATATAACGTGGTACCCAAGTCAACACAAGGCTATCTACCGTGTTGATGATCGTGTCCCCATGAATACCTCCGGCAATGGTCTCTANGACTTTATCCCTTTTCGTCCCACTCCTTCACTTGAACTGGCTATCTTAAGAACCACAGGTGTAATCTTTACAGGATACCCTGTAATTGGGTTTCAGAACCGTCTTCAAGCATCTGGGTCATGCTTGGATAGTATTCAAGATGCAAAGATCACAGCATGTGCATGGGACTCAAGGGTGAAAGGAGAGTTCTTTCACCAAACCACATTTAGCATTAGCTTGTCTGTTGTCAAGAATTTCATTGAAGATGTGCAGAAGCTAGTTCAATTAGAGCCTANAGGGTTGTGTGGCATAGAGCTTTACAATGGAATTCTCATGCGCTATGTCAAGGCTTCAAGTGCATACTTGGGGAACCAAGAGGATGCTTTAGACTTTGACATCACATACTACCGAAGCAAGGACCCAATGACACCTAGGCTTTATGAAGACATTCTTGAAGAGATTGAACAGATNGGGATTTTCAAGTATGGAGGGTTGCCTCACTGGGGTAAGAATAGGAACTTGGCATTTGAAGGGGTCATCAAGAGGTACAAAAATGCAGGGAAGTTTTTGAAGGTTAAAGAGAAGTATGATCCACAAGGGATTTTCTCTAGTTCATGGACAGATCAAGTGCTTGGGCTAAAAGAAGGAGTGACAATACTGAAGGATGGGTGTGCATTGGAAGGCTTGTGCATTTGCTCACAGGATAGCCACTGCAATCCAAGCAAAGGCTACTTTTGCAGACCAGGCAAGGTCTACAAGGAGGCAAGGGTTTGTACTCACGTGTGATACAAATGGGTGTTGTCAAAATTTAAAATAAGGCCATTTTGGGGGTGAGTAAATGAAAAATTGAATGTATACCGAATAATTTATACGTAATTCTTAGATACATCAAACACCAGTTTTCACCCACTTCAGCACATTTTAGTGGCACACAAACTGTCTTTAAAATAGTAGTATACACATATTTTTTCTATGTAATGCATTATTAAGAAAACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00099	30625	35867	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0003885 D-arabinono-1,4-lactone oxidase activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000099s00014925.1	PF01565.18	FAD_binding_4	65	198	3.80E-19
Glyur000099s00014925.1	PF04030.9	ALO	234	501	2.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.769
SRR1783600	control	2.801
SRR1783602	moderate drought stress	2.476
SRR1811619	moderate drought stress	2.385

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.198
DRR006520	Root Summer glycyrrhizin high producing strain	14.680
DRR006521	Root Winter glycyrrhizin high producing strain	0.054
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	25.777
DRR006524	Root Summer glycyrrhizin low producing strain	26.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.378
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.077
SRR2868004	Drought Stress (root)	11.588
SRR2967015	Control (root)	6.533

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.955
SRR9715740	Leaf	0.705
SRR9715741	Leaf	0.504
SRR9715739	Root	0.494
SRR9715742	Root	8.307
SRR9715743	Root	6.552

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	0.031
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.796
SRR8400027	Control - Root	17.472