Gene detail

Gene detail information of Glyur000099s00014924

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00820.1	2.00E-117	IQ-domain 17
NR	XP_004514932.1	0	PREDICTED: protein IQ-DOMAIN 1-like [Cicer arietinum]
Swissprot	tr\|Q8LPG9\|IQD14_ARATH	2.00E-17	Protein IQ-DOMAIN 14
trEMBL	tr\|A0A072TP08\|A0A072TP08_MEDTR	0	IQ calmodulin-binding motif protein {ECO:0000313\|EMBL:KEH18583.1}

Sequence

Transcript Sequence

>Glyur000099s00014924.1
TTTTTTTAACGAAAAGAAAGGAGGAACCTCCTCCTAAAGCTATTATTATCCCACAAAAAGAAATAGTATCTTTTTCTGATTCCATTATAGAAAAAGCCACTTTTGGTTTCTCTCTTGGCCACCCTCAAATTGCTTTATATCCTTCCCGGGTTTCATTATTCACAATCTCATTCATCGGCATCACTCTATTAGTCTATTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAAAACACACATATCCCATTCAGCTTTCAATTATTATTCATTAACATTAAAAGCTTAAGGTAGCTTCTGACACTCCCACTGCTTTCCACCCATGCCACAAAAATCCATAAGCTTTGCCCATTTAGATTAATCTGCTTAGAGATAAATTAATATTATTCTATGCTGCCACTCTCTCACACACATGCACAGGCTGTCTCTCACTGCCATTTTGTTCTTTGTTTTAATACTAAATCAATTTGTGTGCACTCTTTTAAAACCTTGTAGTACTCAACATGATCTTCAAAGCATGATTTTTATTCAGTATTTTATTTATATGGTATGTTGGTCAAAGNAATTTCATTCATTCATTACTCTTTATCCAGCCTAAACTGAAGGAACAGCAAGTGAGAATATCATATCATTTAATTAAAGAGTGTGTACATATGTTATATTTAATTTTTTTTTCTCCAAGGATTTTACAATGAGGGTGGCTCAGATATTATTTCACTGACAAGAAAAAGATTCATTTATTTTGCACANTTGAGGGGGGATCGTGATTCACGACAGGGCCATGATGGTGAGGACAAGTTCACAGTAGCATTGCTGAACGTGTACTTGATAAAAATAACTAAGATTGAACCAAGATCCACAAGTGTGTTTGCCTTGGCTTGTTTTTCCCCTTTCTCTCTTTATTTCTTTTTTCTCCATACACGGTAAAGGACTTGGTTGGGTTGAGGGTCATTCCAACCCAACCCAACCCAGTTGGAGTTGGACCTTTTCTGTCTTTAACTCAACTCTGCACAGTTTTTATTTTCTGGCACTTTCTGGGGGAAGCAGTAAGTAAATGCAGTTTAGTTTTACATGGGGAAGAAAGGAAGTGGTAGCTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACACTGATAAAAGGAGTGGTAGAAGAAGAGATCAGGACTGTGATCAAGAAGAAGATGAGGACAAGAAGAGAGAAAAACGGAGGTGGCTTTTCAGAAAAGCTGTGAATCATGAAACTGTCGTGAACAACACTCAACAAACCCCAACAAAGTTGAAGCATGATGTGGCTGNGGCTGCTGCTGCAGGTGGAGGTGGAGGCGGTGGGGCTTCAAGGACAGACCAAGATCAAAAGCACGCACTTGCGGTGGCGGTGGCCACCGCCGAGGCGGCCATGGCCACCGCTCAGGCTGCTGTGGAGGCGGCAAGGCTGACCAAGCCTGCAACTCATGCTAGGGAGCATTATGCTGCTGTTGCAAGAAGAGCACTTCGTGCGCTTAAGGGGTTGGTGAAGTTGCAAGCTTTGGTGAGGGGTCACAACGTTAGGAAGCAGGCAAAGATGACCCTTCGGTGCATGCAAGCTCTGGTTAGAGTACAAGCAAGGGTNCTTGATCAGCGCATAAGGTCTTCTTCACATGAAGGAAGTAGAAAATCCACCTTTAGTGACACCAATAGCGTTTGGGACTCNCGGTATCTTCAGGATATTTCAGATAGGAAATCAATGTCAAGAGAGGGAAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTTAAGGCCATGTTGCAGCAGAGGAAGGAAGCAGCTATGAAAAGGGACAAGTCCCTATCTCAAGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGAAGAACTTGAAGAGAGACCGAAATGGCTAGACCGGTGGATGGCTACAAAGCCATGGGAGAATAGGGGAAGAGCTTCAACTGATCAAAGAGACCCCATTATTAAGACTGTAGAAATTGACACATCTCAACCTTATTCATATCTAGGCACCAATTACAGAAGATCACACCCAAATTATCAGTATAACCCACACCACCAACCACAGAGACATTCCATTGCCTCACCACTCCACAGAACTCACCAAAATGGATCCATTCACCACCAATCCCTCACTACCCCTTCCCCGGCAAAATCGAGACCCATCCAAGTCCGGTCCGCGAGCCCCCGCTGCNTTAGAGAAGACAGCAGAAGCTACCACACCTCTCAATCTCAAACACCAAGCCTGAGGTCTAATTACCATTACACAGGGAACTTGTGCCAAAATGGTAGGGTAATTGGAACAAGTAATGGTGGTGGTGGTGGTGCTGCTGCTACATTGCCTAATTACATGGCAGCAACCGAGTCTGCAAAGGCTCGAATTCGGTCACAGAGTGCCCCTAGGCAGAGGCCATCTACACCAGAGAGGGACAGAGGAGCTGGATCAGTAAAGAAAAGGCTTTCTTTCCCTGCCCCAGATCCTTATAATGTAGGGGTGGGGTATGGGAATTATGGGCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAATGCATCNCATTTTGGGTTGGAGCAACAGTCCAACTTCTCCTCTTGCTGNACTGAGAGTCTTGGTGGGGAGGTGTCTCCTTCTTCAACTGGGGACCTTAGAAGGTGGTTGAGNTGATTAATTTGTTGCTGCACTTGCATAAGTGTTAGAAGTATGACCCCATTAGGTTATCACCATTCACTTGTTATTTTATTTAGGCTTTTTGTGATGTTTTAGAGTTGTTATTATTTTAGTTATAACCCTTTCACCCCCCCAAAAGAAAGGAAGTTTACCCAGGGAAGGTGACCTGAATCTGATGATTAGGAAGGAGCAGAAAAGCAAGTACTTNCTTGCTAGGAAGCTGAGAAGTGAGAACCATTTGATGTGTTAGCTTATAATTCGTTTTCCATACTTTTGTTAGGATGCATAAGATTAAGAAAAAGTTAGCCGTATGTGGTGGCCTACCTCACTTGGGATGTTGCGTTGATGTTGAAAGAATTGCCTACACCATTTGAATGGCNTTTAATGGACTGTCCTGTCACAATAACATGTAATATTTTGTATTCTAGCTATTTCCTTTACTTAGTAATAATGTACACCCTCACCCCCCTTTAACCTTTGTTTTTCTTTTAATTAAATGGATATTACCAATTTCTATCTAGAGCAAATAGTATAATTATGGGTATACTTCAAAATTAGCAGACACTGAAGTCTTAAGTCTTGGTCCTGTCATATTCTTAGACCTTTATAACCCCACATGAGTAATTGAGGTGATGTTCTCTTTATTTATCTTGCGTACTTTTCACCGTCTCAGAGTGCATTTGCTACATGTCAGTCATGGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00099	20328	24456	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000099s00014924.1	PF13178.1	DUF4005	389	505	8.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.943
SRR1783600	control	2.980
SRR1783602	moderate drought stress	4.257
SRR1811619	moderate drought stress	4.218

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.115
DRR006520	Root Summer glycyrrhizin high producing strain	1.926
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.864
DRR006524	Root Summer glycyrrhizin low producing strain	0.900
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.391
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.640

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.799
SRR2868004	Drought Stress (root)	25.499
SRR2967015	Control (root)	35.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.049
SRR9715740	Leaf	16.224
SRR9715741	Leaf	18.751
SRR9715739	Root	0.148
SRR9715742	Root	3.741
SRR9715743	Root	2.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.399
SRR8749028	MeJA induced 9h	0.486
SRR8749029	MeJA induced 9h	0.983
SRR8749030	Uninduced	0.260
SRR8749031	Uninduced	0.045
SRR8749032	Uninduced	0.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.935
SRR8400027	Control - Root	4.204