Gene detail

Gene detail information of Glyur000099s00014923

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46780.1	6.00E-59	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_007135310.1	1.59E-155	hypothetical protein PHAVU_010G118600g [Phaseolus vulgaris]
COG	YP_003267833.1	7.00E-15	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SHZ6\|UBA1A_ARATH	9.00E-19	UBP1-associated proteins 1A
trEMBL	tr\|V7AP03\|V7AP03_PHAVU	6.00E-156	Uncharacterized protein {ECO:0000313\|EMBL:ESW07304.1}

Sequence

Transcript Sequence

>Glyur000099s00014923.1
AAAATTTTTCTTCAAGAGGGTTTTCTTTTTTCCTTTCACTCCTTCGACAGTAATGATTTTCTTCCTGTTAAGGGTACTAGTGTTGTGGAATCTGAGGAGGAGTTTGCTGTTGTTGTGAATGTAGAAAAGTAGCAATTATAGCCTCAGTGAAGAAGGAGAGAGTAAAAAAAAAAAAACCATTCCTTTAAAGTGAGAAGGACTAGCACGAACAGAATCATGAGTGCACGAGTGTTTTCATTGATGGGTTTTTAGAAGATACAAACNGCTTCTTTTTCCAGCCCTTTATTAACCGTTTTCCTTTTCCCTCCTCTTCCTCTCATATTGAATTTGGATTTTGAGTTTGTTTTTTTGTTTTGTTTTGGGGTTTTTCTTCATCCCATTTGCTTCCTTTTTGCATTTGGGATTTTGGGGCTGCTTTCTTCTGTTGGGAATTTCTAGTGTTTGATATTTCCTTAATGTCTCAACAAAGGCAACCTCAGAATATGTTGGGTGGTAACAATCAGGACCATTATAATGACACAACATTTACCAAAATNTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGAAGGTATTTTGAGCAATTTGGTGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACAGTGGGAGATCCAAAGGCTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCATCTCTTGGTGCAAACAAGAATCGACCACCAACTCTTCAGCATGGTCTCAATCCTTCCATTCTCCTTTATCTACTCTGTGCAGGACGGTTCAGGCCTCCACCTGGAGTGGTGCCATCACATGCTTATCATGGTTCTTCATCTACATTTCTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACCTTGTATCCTCCGAGCTATTATAATGTCTATGGAGTTCAACAGTTTTCACCTTACTACCCATCTGGAGGAGCTGGAGCTTCTGGGGCAGTAGGCTTGATCCACAACAATATCTACCCTTTCTATGGCCAATACTCACAAAATATCCAGGCTCATCATGGTTTTGGAGTTCAACAATACCCTCAAATGGCACANTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTGGCAGTGCCAACCACTAGTGCAGCAACAGTAACTGCAACCACCACAACTACTACAATACCAGCAGGTGTGGCACTAATTGGGGTTGGTAGTAGTTCTCAAGCCTCTGGAACAGCTTCTGAACAAAATTCTACATCTTGATCATTCTCTCTACAAGGGTACAGAACATGCATGCTGTCTTACAAAGGCTAACACATCAAAAGCTGAGTCCAAAACTTCAGCTGTGGAACCATTCATATTAAGAGATTTGTTAGATAAAATGCTTGTTGCCCCTAACCGACCTTAACCCCATTCTCAATTCACCAAGACAACATTCATCATCATCATCATCATACGTGTTTGTTTTTAGGAAAATAGGGTCCTTTTTCTAAAGCAGTTTGTAGAAGTAAGTAGGGGAAGATCACATTCATTCATGTATTCAGCATTTGGTAGAATCCAATTATTTGAGCTTTGGATTCTACCTTTTAGAGTAATTCAACCAAAGGTTTATTATGTCTTGGGTGCTGGGAGCATCCAATGACATAGTCCTTTTGTTTATATTTGCAAGTAGATAGATGGGTTCAAAAAGATTGATTTTATATCTTTGAACCCTTTATTGGCTGGTCAGTCAATTAGGAAGAAAAATTAAATTGAGCTTGGATAGCTCAATAGGTTAGTGTGTATTTTATTTTTCTCTCGTGTCATTCATGATTGTTTTTTTTTNAATCTAAGATAGGATTAGTTGAAAAGAAAAATATCATTAACGTTTATTTGTTTGTTTCTTTTTCACATACAATCATGGCTTTTAGTTTTTACCACTCATCTTTCGCTGTCACTTTACATTCTTTTTTGCTTATGGATAAAGATAATTCTTCTTTTTTGCACCAATTGAAATCTCTTTTGTTCTGTGTACAACTGCAAACGTATTTGGAATCCAAGGGAGATCTCATGTGTGGTGTCAATGGGTGTTGGNACCTTTTGATTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00099	10183	13536	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000099s00014923.1	PF00076.17	RRM_1	28	84	5.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.321
SRR1783600	control	6.291
SRR1783602	moderate drought stress	7.746
SRR1811619	moderate drought stress	7.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.542
DRR006520	Root Summer glycyrrhizin high producing strain	8.459
DRR006521	Root Winter glycyrrhizin high producing strain	0.886
DRR006522	Root Winter glycyrrhizin high producing strain	0.740
DRR006523	Root Summer glycyrrhizin low producing strain	4.471
DRR006524	Root Summer glycyrrhizin low producing strain	4.263
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.164
SRR2868004	Drought Stress (root)	13.400
SRR2967015	Control (root)	14.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.512
SRR9715740	Leaf	0.111
SRR9715741	Leaf	0.516
SRR9715739	Root	7.686
SRR9715742	Root	4.547
SRR9715743	Root	5.146

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.379
SRR8749028	MeJA induced 9h	2.290
SRR8749029	MeJA induced 9h	1.777
SRR8749030	Uninduced	2.020
SRR8749031	Uninduced	0.801
SRR8749032	Uninduced	1.714

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.352
SRR8400027	Control - Root	16.031