Gene detail

Gene detail information of Glyur000098s00008021

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02920.1	2.00E-62	Replication protein A, subunit RPA32
NR	XP_004507861.1	7.42E-167	PREDICTED: replication protein A 32 kDa subunit B-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8LFJ8\|RFA2B_ARATH	8.00E-81	Replication protein A 32 kDa subunit B
trEMBL	tr\|V7CBN2\|V7CBN2_PHAVU	5.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW26753.1}

Sequence

Transcript Sequence

>Glyur000098s00008021.1
GTGGCGGGAAACCAGTTATTTTGATCTTGTCTTGTCCGCGGATAACTATCGAACACACCCTCAATCAATCGATCACTGCATTTCAAATTCAACCCCGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAACAGCAGCATGTATTCGAGCCAGTTCGACGGGAACGCAGCCTTCTCCGGCGGCGGTTTCATGCCTTCTCAGTCCACTCAGACCCCTGACTCCTCCTCCGCTCCCTCCAGGAACCGTGATGCTCAGTCCTTGCTTCCTCTGACGATCAAGCAGATAAACGATGCTTTTCAGTCAAGTGATGATAAATCTAATAATCTGATTATTGATGGTGTGGATGTTAACACCGTTACTCTTGTCGGGAGGGTGTGCAACAAAGTTGGACGGATTACTGATGTTACTTTTGTGCTTGACGATGGCACTGGAAGGATTGAGTGTAACAAATGGCTTCAGGAAGCTGCGGATACAAATGAAGTGGAGGGTATCCTGGATGGAATGTATGTGCGGCTAAATGGACACTTGAAAGGTTTTCAGGGTAAAAGAACCTTTAATGTTTTCTCTTTTAGGCCTGTGACTGACTTCAGCGAGATTGCCTACCATTTCATTGATTGCATATATGTCCATCTATATAATTCCAGGTTACGGCATCTTCAGTCAAGCATCCCTAATCAGCAACAGGTTACTAATTCCACACCAATTACTCCCACAAAAGGTTATCAAGCTCTAGCTGTCCCACCAAATCAATTCTCTGGTCAACATAACCACGGTCAGAGGAGTGTTGAAGATATGGTCTTAGATGTTTTACATCTTTCCACAAACAGGGAAAGAGAAGAGGGAGTCCCTCGCGATCTTATTGCACAGCATCTTGGAATTCCTTTGGATAGACTCATGCTGGCTATTAAAAATCTTATCGAAGAAGGTGCCATTTATGAAGCTATAGCTGATCACTACAAGTCAATCATCAACGGTTGACATCTTGGTGGACAGAGACATCAATCTTGCCTGTGTGTGCTCTACTCTGCGTAACTTTGTGTGCATACCAGTGATGCTAATTGATCCATATGCGGACATAAGCAAAGCAGTAGTTCTGCTAGATTTTGATCAACTCGTTTTTCTTNTCTCTTGATAACTAATGTATTAGAGCATGAACTGGTGGCAAATAGAACATGATATGGAATGTATCTACTGTGCAGAGGGGTTTTCTCAGACTATTGGAGATTAACCAGTTTTAACTTCTAACATCTTGTTGCTACTGTAGTCAGCAGTTGCACTTGCACATAGTTGTCTTGTAATAACTACTACTAAGGACCAAAGGAATTTGGAGGGTGAGGAGCCAATGGGTTTTTCATTGCAATATGGTGTTCTAGAACGATTTTGTTAAGAACCATATGGGCCGAGTCTTGGGCCCTAATTAGTACGACTACTATTTTATTGCAAAAAAACTCATCCGCCTTTTGACCAAAAAAAAACTCATCGGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00098	332537	336344	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006260 DNA replication

GO:0006281 DNA repair

GO:0006310 DNA recombination

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000098s00008021.1	PF01336.20	tRNA_anti-codon	73	141	1.40E-06
Glyur000098s00008021.1	PF08784.6	RPA_C	169	269	1.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.328
SRR1783600	control	7.825
SRR1783602	moderate drought stress	7.305
SRR1811619	moderate drought stress	7.995

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.854
DRR006520	Root Summer glycyrrhizin high producing strain	9.260
DRR006521	Root Winter glycyrrhizin high producing strain	8.965
DRR006522	Root Winter glycyrrhizin high producing strain	8.860
DRR006523	Root Summer glycyrrhizin low producing strain	17.135
DRR006524	Root Summer glycyrrhizin low producing strain	16.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.425
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.311

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.071
SRR2868004	Drought Stress (root)	17.522
SRR2967015	Control (root)	19.836

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.614
SRR9715740	Leaf	10.934
SRR9715741	Leaf	8.311
SRR9715739	Root	4.298
SRR9715742	Root	5.839
SRR9715743	Root	4.989

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.821
SRR8749028	MeJA induced 9h	20.930
SRR8749029	MeJA induced 9h	19.333
SRR8749030	Uninduced	8.051
SRR8749031	Uninduced	7.232
SRR8749032	Uninduced	7.211

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.455
SRR8400027	Control - Root	20.737