Gene detail information of Glyur000098s00008015 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30220.1 | 6.00E-30 | small nuclear ribonucleoprotein F |
| NR | XP_003549441.1 | 3.24E-40 | PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] |
| COG | YP_006772903.1 | 1.00E-08 | like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis AR1] |
| Swissprot | tr|Q9SUM2|RUXF_ARATH | 2.00E-38 | Probable small nuclear ribonucleoprotein F |
| trEMBL | tr|I1MSQ9|I1MSQ9_SOYBN | 5.00E-41 | Small nuclear ribonucleoprotein F {ECO:0000256|PIRNR:PIRNR006609} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 295231 | 296141 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000098s00008015.1 | PF01423.17 | LSM | 11 | 66 | 1.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.674 |
| SRR1783600 | control | 56.751 |
| SRR1783602 | moderate drought stress | 52.097 |
| SRR1811619 | moderate drought stress | 50.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 83.076 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.303 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 101.897 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 95.514 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 79.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 77.191 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.815 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 129.830 |
| SRR2868004 | Drought Stress (root) | 115.456 |
| SRR2967015 | Control (root) | 111.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.332 |
| SRR9715740 | Leaf | 57.866 |
| SRR9715741 | Leaf | 54.417 |
| SRR9715739 | Root | 41.270 |
| SRR9715742 | Root | 48.584 |
| SRR9715743 | Root | 42.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 269.531 |
| SRR8749028 | MeJA induced 9h | 101.262 |
| SRR8749029 | MeJA induced 9h | 194.664 |
| SRR8749030 | Uninduced | 70.962 |
| SRR8749031 | Uninduced | 26.103 |
| SRR8749032 | Uninduced | 67.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 119.099 |
| SRR8400027 | Control - Root | 113.522 |