Gene detail

Gene detail information of Glyur000098s00008013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57440.1	6.00E-110	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_007154764.1	6.33E-155	hypothetical protein PHAVU_003G145700g [Phaseolus vulgaris]
COG	YP_720590.1	2.00E-60	HAD family hydrolase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q8VZP1\|GPP2_ARATH	1.00E-138	(DL)-glycerol-3-phosphatase 2
trEMBL	tr\|V7CBN7\|V7CBN7_PHAVU	2.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW26758.1}

Sequence

Transcript Sequence

>Glyur000098s00008013.1
ATTATATTATACTCGGAATAATAAATTAAGATGCGTGATTCGGCTTCGATACGTTGCGCAAGTAGTAAGTAAACCCGATTTATGAGATGATTCAGATCGGAAGCACCGAAGCAGTAAGCAGAAGACACAAGACAGAAGTGTGTTGTGTAGGTTCCATTGTCCATTGTTCATTTTTGAGAGAATCACAGTGCAATGGCCAATCCCTCCGCCTCCGGTGGCAGAAGGCCAGTCACAATCACACACGTCGCGTTCGACATGGACGGTCTCCTTCTCGACACAGAGAAGTTCTATACTGAAGTACAGGAAATTATACTTGCTAGGTACAATAAAACCTTTGATTGGTCCCTCAAGGCAAAGATGATGGGAAAGAAAGCAATAGAAGCTGCTAGGGTCTTTGTTGAAGAGACTGGAATCAGTGATTCTCTTAGTGCTGAGCAATTTCTGGTAGAAAGAGAGCAGATGCTGCAGGATTTGTTTCCCACGAGTGAGCTGACGCCAGGTGCTAGCCGTTTAGTCAAGCATCTACATGCAAAAGGANTTCCAATTTGCTTGGCAACTGGTTCTCACAGGCGACATTTTGAATTGAAAACCCAAAGACATGGTGAAATTTTTTCTTTGATGCATCATGTTGTTCTTGGTGATGACCCTGAAGTTAAACAAGGCAANCCATCACCAGATGTATTTCTTGCAGCAGCCAAGAGATTTGAGGGTGGACCAGTAGATCCTTGTAACGTGCTTGTTTTTGAAGATGCACCCTCAGGAGTTCTTGCAGCTAAGAATGCCGGGATGTCTGTTGTTATGGTTCCTGATCCAAGGCTGGACAAATCTTTTCATGATGCAGCAGACCAAGTTTTGAACTCATTGTTGGATTTCAACCCGGGTGAGTGGGGTTTACCTCCATTTGAAGATAATGGAAGCTGAATGTGGGGTTTCCATTACTGTTCTTCAATTTTATTGCGGGCAGAAAAAGCTGCCCATCTTTTATCCAACAAAATGGATGAGTAATTAATCCATTTCCATGGAGTGTCAGTTACATTATTTGACCTTTATATTCTGGTGCTTGGTAATGGTGTTACTACTATCAATGTCGCCTTGAGACCTTAGAGAGGCGATATATTGTTTACGTATTTTCTCGTAGGATATGAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00098	279234	284575	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000098s00008013.1	PF13419.1	HAD_2	18	204	7.60E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.725
SRR1783600	control	10.539
SRR1783602	moderate drought stress	8.129
SRR1811619	moderate drought stress	8.147

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.942
DRR006520	Root Summer glycyrrhizin high producing strain	23.102
DRR006521	Root Winter glycyrrhizin high producing strain	12.794
DRR006522	Root Winter glycyrrhizin high producing strain	11.949
DRR006523	Root Summer glycyrrhizin low producing strain	19.261
DRR006524	Root Summer glycyrrhizin low producing strain	19.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.161
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.469

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.501
SRR2868004	Drought Stress (root)	31.345
SRR2967015	Control (root)	29.426

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.171
SRR9715740	Leaf	14.441
SRR9715741	Leaf	12.101
SRR9715739	Root	7.114
SRR9715742	Root	10.396
SRR9715743	Root	8.759

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.297
SRR8749028	MeJA induced 9h	11.067
SRR8749029	MeJA induced 9h	13.502
SRR8749030	Uninduced	10.391
SRR8749031	Uninduced	3.169
SRR8749032	Uninduced	4.334

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.589
SRR8400027	Control - Root	20.701