Gene detail information of Glyur000098s00007987 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25830.1 | 5.00E-33 | Uncharacterised protein family (UPF0497) |
| NR | XP_003610149.1 | 2.69E-92 | hypothetical protein MTR_4g128520 [Medicago truncatula] |
| Swissprot | tr|C6SZ04|CSPL3_SOYBN | 1.00E-86 | CASP-like protein 2C1 |
| trEMBL | tr|A0A072TPZ4|A0A072TPZ4_MEDTR | 1.00E-92 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 129659 | 131403 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000098s00007987.1 | PF04535.7 | DUF588 | 5 | 157 | 3.10E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.097 |
| SRR1783600 | control | 1.261 |
| SRR1783602 | moderate drought stress | 1.200 |
| SRR1811619 | moderate drought stress | 1.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.257 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.149 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.892 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.617 |
| SRR2868004 | Drought Stress (root) | 1.469 |
| SRR2967015 | Control (root) | 1.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.349 |
| SRR9715740 | Leaf | 11.125 |
| SRR9715741 | Leaf | 6.858 |
| SRR9715739 | Root | 0.480 |
| SRR9715742 | Root | 1.731 |
| SRR9715743 | Root | 3.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.241 |
| SRR8749028 | MeJA induced 9h | 1.127 |
| SRR8749029 | MeJA induced 9h | 0.310 |
| SRR8749030 | Uninduced | 0.802 |
| SRR8749031 | Uninduced | 0.225 |
| SRR8749032 | Uninduced | 0.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.848 |
| SRR8400027 | Control - Root | 9.569 |