Gene detail

Gene detail information of Glyur000098s00007986.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25810.1	1.00E-115	xyloglucan endotransglycosylase 6
NR	XP_003542150.1	0	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like [Glycine max]
COG	YP_004641534.1	3.00E-19	beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q38910\|XTH23_ARATH	3.00E-151	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBL	tr\|I1LVS8\|I1LVS8_SOYBN	0	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000098s00007986.1
GCACAAAATAACAACTCTGTCTCGCTCACATACAGAAAAACCTCTTCACACACACGTTGTCCAATCCAATGGCTTCTTTCTCTTCTGTTCCTTGTGCANTTGTTCTTGTCACGGCGTTTCTAATCTCTACACATTCCATGGTAGCCTTTGGTGGTGGAAACTTGTACCAAGATGTTGATATCACTTGGGGAGATGGCAGGGGTAAGATTGTGAACAATGGTCAGCTTCTTACTCTGTCCCTTGACAGGGCCTCTGGCTCTGGCTTTCAGTCCAAGAATCAGTATCTTTATGGCAAGATTGACATGCAACTCAAACTTGTCCCTGGAAATTCCGCTGGCACTGTCACCGCTTATTATTTACGTTCAGAAGGGTCATCATGGGATGAGATAGACTTTGAGTTTTTGGGCAATTTGAGTGGTGATCCTTATATAGTTCATACCAACGTATACACCCAAGGGAAGGGTGACAGAGAGCAGCAATTCTACCTCTGGTTTGACCCAACTGCAGATTTTCACACCTATTCCTTTCTCTGGAATCCTTCACATGTTGTGTTTTATGTTGATGGGAGACCAATTAGGGAATTCAAGAACTTGGAGAGTGCGGGTGTTCCCTACCCAAAGAACCAACCNATGAGATTATATTCAAGTCTATGGAATGCTGATGACTGGGCAACAAGAGGAGGACTTGTGAAGACAGATTGGAGCCAAGCTCCGTTCACTGCTTCTTTCAGGAACTTCAGAGCCAATGGGTGTGTTTGGTCCAATGGGGTTTCTTCTTGCAGCAAGTCCAACAACTCTTCTGATAATGCTTGGCTATCCCAACAGCTGGATTTTACAAACCAGAAGAGGCTTAAATGGGTGCAGAAGAATTACATGGTTTACAATTACTGCACTGACACTAAGCGATTCCCTCAGGGTCTCCCTCTGGAATGCACTGTCCGCACCAAGGCATAAGAGGAATACAACCCATTCTGTTACATATGTGTGCATTCTTTTTTTTTTTTTTTCTTTTTTAACGTCAATACCATCTTATCGTTTGCCATTTTTTTGTACAATGCTGTTTGACCTGTGTTCAGGGGTCATATCGTAATGTAGTAATGTTAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00098	120911	122275	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000098s00007986.1	PF00722.16	Glyco_hydro_16	34	212	1.60E-62
Glyur000098s00007986.1	PF06955.7	XET_C	237	288	8.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.809
SRR1783600	control	7.823
SRR1783602	moderate drought stress	6.066
SRR1811619	moderate drought stress	5.916

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.722
DRR006520	Root Summer glycyrrhizin high producing strain	111.973
DRR006521	Root Winter glycyrrhizin high producing strain	32.727
DRR006522	Root Winter glycyrrhizin high producing strain	32.239
DRR006523	Root Summer glycyrrhizin low producing strain	206.145
DRR006524	Root Summer glycyrrhizin low producing strain	206.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.257
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.251

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.438
SRR2868004	Drought Stress (root)	62.341
SRR2967015	Control (root)	31.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.204
SRR9715740	Leaf	6.754
SRR9715741	Leaf	5.084
SRR9715739	Root	17.787
SRR9715742	Root	74.763
SRR9715743	Root	56.569

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	856.531
SRR8749028	MeJA induced 9h	1345.539
SRR8749029	MeJA induced 9h	1996.235
SRR8749030	Uninduced	1246.222
SRR8749031	Uninduced	1324.172
SRR8749032	Uninduced	2163.617

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.661
SRR8400027	Control - Root	16.864