Gene detail information of Glyur000098s00007985 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48070.1 | 2.00E-09 | xyloglucan endotransglucosylase/hydrolase 20 |
| NR | XP_006425208.1 | 4.67E-11 | hypothetical protein CICLE_v10010859mg [Citrus clementina] |
| Swissprot | tr|Q9FI31|XTH20_ARATH | 3.00E-11 | Xyloglucan endotransglucosylase/hydrolase protein 20 (Precursor) |
| trEMBL | tr|X5IDB4|X5IDB4_IPONI | 1.00E-11 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 119029 | 119250 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.053 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.452 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.044 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.642 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.318 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.546 |
| SRR8749028 | MeJA induced 9h | 7.897 |
| SRR8749029 | MeJA induced 9h | 5.805 |
| SRR8749030 | Uninduced | 10.991 |
| SRR8749031 | Uninduced | 3.034 |
| SRR8749032 | Uninduced | 9.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |