Gene detail

Gene detail information of Glyur000098s00007983.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25810.1	5.00E-122	xyloglucan endotransglycosylase 6
NR	XP_008799495.1	0	PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
COG	YP_004641534.1	1.00E-15	beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q38910\|XTH23_ARATH	2.00E-150	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBL	tr\|V7CBQ5\|V7CBQ5_PHAVU	9.00E-168	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000098s00007983.1
CCCAAAACAAAATCTNTTGCATTCTTCTTTTATTGCTCAGAGTCTTTTTTATCTGAATAATAATATTGAATTGAAACGTCTTCTTCTATGGCCTTTTCAAGAGTTGCATTGCTAGTGCTGCTAATCTCTACGGTTGTGAATATTGCTTCTGCTGCTGGCAATTTCTATCAAGACTTTGACATAACGTGGGGGGATGGCCGCGCTAAGATACTCGACAATGGCCAGCTTCTGACTCTGTCCCTTGACAAAGCCTCTGGCTCTGGGTTTCAGTCCAAGAACGAATACCTTTTTGGCAAAATCGATATGCAGCTTAAATTGGTTCCTGGCAACTCTGCTGGCACTGTCACTGCCTACTATCTATCATCAAAAGGAGCAGGGTGGGATGAGATTGACTTCGAATTCCTGGGCAATTTGAGTGGTGACCCATACATCCTTCACACCAATGTGTTTAGCCAAGGCAAGGGTAACAGGGAGCAACAATTCTACCTCTGGTTCGACCCAACTGCAGATTTCCACACCTATTCCATCCTCTGGAACCCCCAACGCATTGTTTTCTCGGTGGATGGAACTCCGATTAGGGAATTCAAGAACTCGGAATCAATTGGTGTTCCATTCCCCAAAAGCCAGGCAATGAGGATATACTCCAGCCTGTGGAATGCCGATGACTGGGCTACAAGGGGAGGCCTTGTCAAGACAGATTGGACCCAAGCTCCTTTCACCGCTTCCTACAGAAACTTCAATGCCAATAATGCATGCACTTGGTCTTCAGGAACATCATCTTGCTCCTCAAACTCAAACACTACTCCATCTAATAGCAATAACAGTGCCAATAATGCTTGGCTCTCGGAGGAGCTGGATTCCACTAGGCAAGAGAGGCTCAAGTGGTTCAATCAAATCCACCACCAATCCATGGCATTCCTTCATTCAGCAATTACTGTCCTCTCTCTATTGGTCGTGGCAGCTTCTGCCGGCAACTTCAACCAGGATTTTGATATAACCTGGGGAGATGGCCGAGCCAAGATACTCAACGATGGCCAGCTTCTCACTCTTTCCCTCGACAAGGCCTCTGGTTCGGGGTTTCAGTCCAAGAACGAATACCTCTTCGGCAAGATTGATATGCAGCTCAAACTCGTACCCGGAAACTCCGCAGGCACTGTCACCGCTTACTATCTGTCATCGAAGGGGTCAAACTGGGACGAGATAGACTTTGAGTTTTTGGGGAATGTGAGTGGGGAACCATACATTCTCCACACCAATGTGTTCAGTCAGGGCAAAGGCAACAGAGAGCAACAGTTCTATCTCTGGTTCGACCCCACTGCTGATTTCCACACCTATTCCATCCTCTGGAACCCCCACCGCATCATCTTCTCAGTGGATGGAACAGCCATAAGAGAATTCAAGAACATGGAATCAAGAGGAGTTGCGTTTCCAAAGGGGCAGGCAATGAGGATATACTCCAGCCTGTGGAATGCCGATGACTGGGCAACAAGGGGTGGCCTTGTGAAGACTGATTGGTCCCAAGCTCCATTCACCGCTTCCTACAGAAACTTCAATGCCGACAGTGCCTGCGTCGTCCACTCCCCTGCCGCCTCTTCTTCTTGCGCTAATTCCAACTCTGCCTCCTCCAATTCCAATGATGCGTGGTTGTCCCAAGAACTGGATTCAACGTCTCAGGAGAGATTGCGTTGGGTGCAGAACAATTACATGATTTACAATTATTGCACCGACGCCAAAAGATTTCCCCAGGGCCTTCCCCCAGACTGCACAACATCAATGAACCTGAGAGCAGTCATCACAGTGTCCTTAGCAGATCGGGCTATCCATTTGATCCTGGGTGGCGTGAAGCTTGTTGTACCTTTCATATTACATAACATGGCTTCAAGCCAATCCCAAGTACTTCTGATTCCTCTGCTTGTGACCCTNTACATTGTAGCCTTTGCTGCTGCCGGTAACTTAAACCAAGACTTTCAGATTACATGGGGTGATGGTCGTGCCAAAATACTCAACAACGGCAACCTCCTCACCCTGTCCCTTGACAAAGCCTCTGGCTCTGGCTTCCAATCCAAGAACGAATACTTTTATCCTCAAAGGGATCAACATGGGATGAGATTGACTATGAATTCTTGGGGAACCTCAGTGGTGACCCTTATATCCTACACACCAATGTGTTCAGCCAGGGAAAGGGTAACAGGGAGCAACAATTCTATCTCTGGTTTGACCCCACTGCTGATTTCCACACATACTCAATTCTCTGGAATCCCCAACGCATTTTTTTCTGTGGATGGCACACCAATAAGGGAGTTCAAGAATATGGAATCAAAGGGAGTTCCATTTCCAAAGAGTCAACCAATGAGGATATACTCGAGCCTGTGGAATGCTGATGATTGGGCCACAAGGGGTGCACCCACCGAAGCCTCTGCTGAGCGGTTGAGTCCAACTCTTGTGAAAGCCATCCAGATGCAGGGGAACTCGATTTGCATGAGGATTTCCCACCATCACATACTACTATACTATACTATACTATACTCCTTTCAAACATTTAAGCTCACTGCAGAGATGGCTTTAACTTTATCCAACATGCTTCTAATTCCTCTTCTTGTTAGCTCTCTAATGGTTGCATTTGCTGGTAACTTGAACCAAGACTTTGACATAACATGGGGAGATGGCCGAGCCAAGATACAAAACAATGGTGAGTTACTCACTCTGTCACTGGACAAAGCATCTGGTTCAGGATTCCAATCAAAGCATGAGTATCTATTTGGGAAGATTGACATGCAGCTCAAGCTTGTCCCAGGAAACTCTGCTGGCACTGTCACTGCTTATTATTTATCTTCAAAAGGATCAACTTGGGATGAGATAGACTATGAGTTTCTAGGAAATTTGAGTGGTGACCCATATATCCTTCACACCAACGTTTTCAGCCAAGGCAAAGGAAACAGGGAACAACAATTCTATCTATGGTTTGACCCAACAGCCGATTTCCACACTTATTCTATCATATGGAACCCCCAGCGGATTATATTCTCAGTTGATGGCACTCCCATTAGAGAGTTCAAGAACTCAGAGACTATTGGTGTCCCCTTCCCAAAGAACCAGCCAATGAGGATATATTCTAGTTTGTGGAATGCTGATGACTGGGCAACAAGAGGTGGGCTTGTCAAGACAGACTGGACACAAGCTCCATTCACNGCTTCCTATAGAAATTTTAATGCTGATGCTTGCATCTGGTCTTCTGGAGCATCATCTTGTCGTTCAAGTTCTACACCAAACGCTGCTTCCTCCACCAGCGGTTCTTGGCTTTCACAGGAGCTGGACTCTACAGGCCAAGAGAGGTTAAAATGGGTGCAGAAGAACTACATGATATACAATTACTGCACAGACACAAAACGATTTCCACAGGGTTCTCCTCCAGAATGCAACAGCTCATAAAAAGAGAAAACAAAGCAACCCATCCATACTATTTTCTATTATCAGTACCATTCCAGCATTAGTTTGTTGATGTAGTAGCTATTGTAGTTTGATTCTTTCATTTGTTTCCATCTTTGTCAATTGTCATCACTATGGCAACATTTATAGTGTGTATACATATCCCTTTTATAATGAAACATTCTTTTTCTTATTAGATTTTTCTGTCGTTTATTTGCGATATCTTTAGTTTGTGTTAAGAAGCATAAAATATT

Protein Sequence

>Glyur000098s00007983.1
MAFSRVALLVLLISTVVNIASAAGNFYQDFDITWGDGRAKILDNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGAGWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKSQAMRIYSSLWNADDWATRGGLVKTDWTQAPFTASYRNFNANNACTWSSGTSSCSSNSNTTPSNSNNSANNAWLSEELDSTRQERLKWFNQIHHQSMAFLHSAITVLSLLVVAASAGNFNQDFDITWGDGRAKILNDGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGSNWDEIDFEFLGNVSGEPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSILWNPHRIIFSVDGTAIREFKNMESRGVAFPKGQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNADSACVVHSPAASSSCANSNSASSNSNDAWLSQELDSTSQERLRWVQNNYMIYNYCTDAKRFPQGLPPDCTTSMNLRAVITVSLADRAIHLILGGVKLVVPFILHNMASSQSQVLLIPLLVTLYIVAFAAAGNLNQDFQITWGDGRAKILNNGNLLTLSLDKASGSGFQSKNEYFYPQRDQHGMRLTMNSWGTSVVTLISYTPMCSARERVTGSNNSISGLTPLLISTHTQFSGIPNAFFSVDGTPIREFKNMESKGVPFPKSQPMRIYSSLWNADDWATRGAPTEASAERLSPTLVKAIQMQGNSICMRISHHHILLYYTILYSFQTFKLTAEMALTLSNMLLIPLLVSSLMVAFAGNLNQDFDITWGDGRAKIQNNGELLTLSLDKASGSGFQSKHEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGSTWDEIDYEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSIIWNPQRIIFSVDGTPIREFKNSETIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTQAPFTASYRNFNADACIWSSGASSCRSSSTPNAASSTSGSWLSQELDSTGQERLKWVQKNYMIYNYCTDTKRFPQGSPPECNSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00098	103495	117710	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16
EAR motif-containing Proteins	other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000098s00007983.1	PF00722.16	Glyco_hydro_16	27	206	4.80E-61
Glyur000098s00007983.1	PF00722.16	Glyco_hydro_16	297	477	4.60E-61
Glyur000098s00007983.1	PF06955.7	XET_C	513	559	1.00E-21
Glyur000098s00007983.1	PF00722.16	Glyco_hydro_16	729	772	1.40E-09
Glyur000098s00007983.1	PF00722.16	Glyco_hydro_16	850	1029	8.90E-62
Glyur000098s00007983.1	PF06955.7	XET_C	1064	1110	1.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.838
SRR1783600	control	16.181
SRR1783602	moderate drought stress	23.870
SRR1811619	moderate drought stress	23.341

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	237.273
DRR006520	Root Summer glycyrrhizin high producing strain	235.464
DRR006521	Root Winter glycyrrhizin high producing strain	22.690
DRR006522	Root Winter glycyrrhizin high producing strain	22.271
DRR006523	Root Summer glycyrrhizin low producing strain	700.806
DRR006524	Root Summer glycyrrhizin low producing strain	699.627
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.913

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	73.013
SRR2868004	Drought Stress (root)	117.530
SRR2967015	Control (root)	275.554

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	216.846
SRR9715740	Leaf	210.081
SRR9715741	Leaf	199.473
SRR9715739	Root	460.557
SRR9715742	Root	726.715
SRR9715743	Root	639.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1146.936
SRR8749028	MeJA induced 9h	1397.365
SRR8749029	MeJA induced 9h	2075.576
SRR8749030	Uninduced	2505.664
SRR8749031	Uninduced	1402.151
SRR8749032	Uninduced	1639.896

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.577
SRR8400027	Control - Root	177.490