Gene detail information of Glyur000098s00007970 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30320.1 | 1.00E-50 | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
| NR | NP_001235516.1 | 3.24E-100 | uncharacterized protein LOC100306470 precursor [Glycine max] |
| COG | YP_003523423.1 | 4.00E-31 | SCP-like extracellular [Sideroxydans lithotrophicus ES-1] |
| Swissprot | tr|Q40374|PR1_MEDTR | 7.00E-94 | Pathogenesis-related protein PR-1 (Precursor) |
| trEMBL | tr|C6SZJ3|C6SZJ3_SOYBN | 1.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G01230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 38197 | 38715 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000098s00007970.1 | PF00188.21 | CAP | 44 | 160 | 2.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 563.564 |
| SRR1783600 | control | 556.029 |
| SRR1783602 | moderate drought stress | 84.010 |
| SRR1811619 | moderate drought stress | 82.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 539.381 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 536.671 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 202.238 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 201.718 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.925 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 450.812 |
| SRR2868004 | Drought Stress (root) | 223.878 |
| SRR2967015 | Control (root) | 430.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.743 |
| SRR9715740 | Leaf | 0.684 |
| SRR9715741 | Leaf | 3.874 |
| SRR9715739 | Root | 1592.107 |
| SRR9715742 | Root | 88.453 |
| SRR9715743 | Root | 345.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 115.346 |
| SRR8749028 | MeJA induced 9h | 25.744 |
| SRR8749029 | MeJA induced 9h | 123.502 |
| SRR8749030 | Uninduced | 0.156 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3177.282 |
| SRR8400027 | Control - Root | 2506.283 |