Gene detail information of Glyur000098s00007969 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25780.1 | 2.00E-60 | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
| NR | KHN34793.1 | 8.76E-122 | Pathogenesis-related protein PR-1 [Glycine soja] |
| COG | YP_003523423.1 | 6.00E-27 | SCP-like extracellular [Sideroxydans lithotrophicus ES-1] |
| Swissprot | tr|Q40374|PR1_MEDTR | 6.00E-52 | Pathogenesis-related protein PR-1 (Precursor) |
| trEMBL | tr|I1LVT9|I1LVT9_SOYBN | 9.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G01250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00098 | 34675 | 35307 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000098s00007969.1 | PF00188.21 | CAP | 78 | 198 | 4.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 94.842 |
| SRR1783600 | control | 118.738 |
| SRR1783602 | moderate drought stress | 33.474 |
| SRR1811619 | moderate drought stress | 33.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.001 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 78.237 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.353 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 124.974 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 123.931 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.389 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 77.201 |
| SRR2868004 | Drought Stress (root) | 73.998 |
| SRR2967015 | Control (root) | 23.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.571 |
| SRR9715740 | Leaf | 1.631 |
| SRR9715741 | Leaf | 1.934 |
| SRR9715739 | Root | 110.148 |
| SRR9715742 | Root | 117.633 |
| SRR9715743 | Root | 112.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.112 |
| SRR8749028 | MeJA induced 9h | 0.024 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.049 |
| SRR8749032 | Uninduced | 0.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 378.180 |
| SRR8400027 | Control - Root | 361.666 |