Gene detail

Gene detail information of Glyur000097s00008348

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07210.1	2.00E-26	Ribosomal protein S18
NR	XP_004494819.1	2.80E-125	PREDICTED: uncharacterized protein LOC101509273 isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072UFS4\|A0A072UFS4_MEDTR	2.00E-113	Ribosomal protein S18 {ECO:0000313\|EMBL:KEH24635.1}

Sequence

Transcript Sequence

>Glyur000097s00008348.1
AGATAAGCCTACTACATTACTGGTTCAGAAATCAGAAACACAATTTGAGCCACCACTCCCTTCTTCAGTCTCGCTCACCGGCCACCCACCGCCGTCCTCACCGTTCATCCTCCTTNATTGAAAGAGAGAGACTCCGTTCGTGCTCACAGGAAAAAAATGAAGATTGTTTCAGTAGCATTTAGGTCGTTGAAAGGAAATTTGTCACATAGGTTTCATCAGACTCATTTGCTCAGAAGTCTTTCTTCATGGACATTTCCAGAAAATGGAACTGCTAATCAGCAGGACAATAAGTCAGAGTCTCCTGAAGAATTTGAGCAGCGGATATTTAGTACTGGGGGAAATTCCAAACTTGATACCATTTTTAATAAGCTTAATCAAATGGGAAAGGCTCGAGATAGATCCAGTTCAGTACATGGTGGAAGTCCCCAGATGTTGGATAACCTAGAACAAAGTTTTGACACATTATCTGATGGAATGGATGGAAAACTGAAGAATGCTGCCAGATACTTTGAATTTGATCCAGATGAAATCCTTAAAGAGGATTATTCTTTTCGATATGATACCAATTTTCCGCCTCGTACAACATATGATACAAAGGATCTTGATCTTACAAAACCTGCTGTACGCAAAGCCCCTGTAAGGGATGAATTCCATGTAACCACCAAAGAAGTTCTTAGTCAAGCAGATTTCAGGACTGGCATTAGTGCAAAAGCTCAAAGGAAGGTTGCAAGGGAGATTAAAACTGCCCGAGCTTTTGGCTTAATGCCCTTCACAACAATGGGTACGAAGTCATTTATTTTTGGGAGAACTATGGAGACTCTTGATGAGGACTTCGCCTACAGGAGTGAGAACAGAAACGTGCCTAGTGAACTTGATATGGAATGAGACAACGCTTAGAACATCAATATAAATGCTTCTAACTTGGCCTTCTTAAGGGCTTCTAGGTCATCATGATTTATGGTGTTTTGGTGACAAGAATTNCTATAACGTTGTCGATTATTTGCTCATATTTGATTATGTCTAACATAGCCTAAAGTTTCATTTGGTGTATGAATCGTCCAAGGTCTCTCTTTCACTTTCCTTATTACACTTATGTTTTGTATTTATTTAATGCCCAATAAAGGGAAGAACTTTATCAAATTGGGTCTCTAAAGTGACAAGTTAGTTAGATGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	345256	351227	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008348.1	PF01084.15	Ribosomal_S18	180	203	1.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.858
SRR1783600	control	19.190
SRR1783602	moderate drought stress	18.073
SRR1811619	moderate drought stress	18.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.898
DRR006520	Root Summer glycyrrhizin high producing strain	28.624
DRR006521	Root Winter glycyrrhizin high producing strain	18.392
DRR006522	Root Winter glycyrrhizin high producing strain	16.951
DRR006523	Root Summer glycyrrhizin low producing strain	17.827
DRR006524	Root Summer glycyrrhizin low producing strain	17.981
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.223
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.649

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.480
SRR2868004	Drought Stress (root)	38.273
SRR2967015	Control (root)	33.751

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.385
SRR9715740	Leaf	74.843
SRR9715741	Leaf	72.762
SRR9715739	Root	12.645
SRR9715742	Root	27.339
SRR9715743	Root	21.942

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.195
SRR8749028	MeJA induced 9h	32.187
SRR8749029	MeJA induced 9h	30.226
SRR8749030	Uninduced	14.914
SRR8749031	Uninduced	8.845
SRR8749032	Uninduced	11.249

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.518
SRR8400027	Control - Root	37.638